Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00328 ATGGAGAAACAGCAGGGCCACGAGGAGGAGGAGGAGGAACCCAAACCTGTGGTTCTCATCACAGGATGCTCCACGGGAGGGATAGGCCACGCACTTGCACGCCAGTTCGCGGCCAATAGGTGCAGGGTGGTCGCGACGAGCAGGTCGCGGTCCAGCATGGCGGATCTGGAACACGATCACAGGTTCTTTCTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTTCGCAGAGTGGTTGATGCTGTTGTTGACAAATACGGTCGCATCGACGTCCTCGTTAACAACGCCGGTGTTCTGTGTGTGGGCCCACTTGCCGAGGTTCCTCTCTCTGCCATCCAAAACACTTTCGACATCAATGTCTTTGGTTCCTTGAGAATGATTCAGGCTGTTGTTCCTCATATGGCAACTAGGAAACAGGGCAAGATTGTCAACCTTGGTAGCGTTGCTGCCTTGGCCTCTGGACCTTGGTCAGGCACTTATACTGCTTCCAAAGCTGCTCTTCATGCTTGCACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTCAATGTTGTCCCCGGAGCTATCAAATCAAATATTGGAGATTCTGCCATAACCAGCTACAACCGCATGCCAGAATGGAAATTATTCAAGCCTTTTGAAGCAGCAATCCGAGATAGAGCTTATTTTTCTCAGAAGTCCAAAACAACCCCTACAGATGAGTTTGCTATAAACACTGTAGCTGCTGTCCTTAAGGAGAAACCGCCTGCATGGTTCACCTATGGGCATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTCTTTTGAAGAAAGCAATGAAAGGCTGA 861 0.4843 MEKQQGHEEEEEEPKPVVLITGCSTGGIGHALARQFAANRCRVVATSRSRSSMADLEHDHRFFLEELDVQSDESVRRVVDAVVDKYGRIDVLVNNAGVLCVGPLAEVPLSAIQNTFDINVFGSLRMIQAVVPHMATRKQGKIVNLGSVAALASGPWSGTYTASKAALHACTDTLRLELGHFGIDVVNVVPGAIKSNIGDSAITSYNRMPEWKLFKPFEAAIRDRAYFSQKSKTTPTDEFAINTVAAVLKEKPPAWFTYGHYSTVMAIMYHLPISVRDFLLKKAMKG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00328 286 Gene3D - 16 274 - -
Pumo1g00328 286 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 14 285 - -
Pumo1g00328 286 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 - -
Pumo1g00328 286 Pfam short chain dehydrogenase 17 199 IPR002347 -
Pumo1g00328 286 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Pumo1g00328 286 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Pumo1g00328 286 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Pumo1g00328 286 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Pumo1g00328 286 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Pumo1g00328 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Pumo1g00328 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Pumo1g00328 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Pumo1g00328 286 CDD 17beta-HSD-like_SDR_c 17 262 - -
Pumo1g00328 286 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 14 266 - -
Pumo1g00328 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 270 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00328 Pumo-Chr1 4865627 4890070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00328 19 190 Lipid Metabolism Gene Families AT1G67730 32.275 1.97e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00328 - - gmx:100789660 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00328 1 4865627 4890070 Pumo1g00328 1 4865627 4890070 ECH