Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00317 ATGCTGTGCGTCAACACTGCCTTCACCTCTTTCTTACCCAGAAAATCAACTTGCGTCTTTGCCTCCAAATCAACCACCCCAATTTCCTGCACCCTACAAGGAACAGTTGTAGAACCAAAATCTACTGCTGCTGCTGAACCGCTTTTGCTTAATGCAGTTCGTGGGGTAGATGTTGAAAGACCCCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATTTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTTGATCTTGTGGTGGAAATTTCTCTGCAACCGTGGCATGTTTTCAAGCCTGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTCGATATTGTGAAGGGTAAGGGTCCTGTCATATTTGATCCTATTCACACAGCTGCTCAGGTCGATCAAGTGAGGGAGTTTATTCCTGAAGAATCAGTTCCATATGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGGGCACCATTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCCTCAAAAAACTTTTCAAAAATAAAAAGATTGGCTTTCTCTGAATCCAAGATCCTGCACTCATTACTGCAGAAGTTTACAACGTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAACTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGTCATCCAAAACTCCCTTTGATCCTCTATGCAAGTGGGTCTGGGGGCTTGCTTGAAAGACTAGCTTTGACAAGCGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCCGATGGTAGGAGGCGACTGGGACCGAATATAGCTGTTCAGGGAACGTCGACCCTGGTGTTCTTTTTGGTTCAAAAGAGTTCATCACTGATCGGATAA 1038 0.4345 MLCVNTAFTSFLPRKSTCVFASKSTTPISCTLQGTVVEPKSTAAAEPLLLNAVRGVDVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTAAQVDQVREFIPEESVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPKLPLILYASGSGGLLERLALTSVDVVSLDWTVDMADGRRRLGPNIAVQGTSTLVFFLVQKSSSLIG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00317 345 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Pumo1g00317 345 CDD URO-D 50 328 IPR006361 GO:0004853|GO:0006779
Pumo1g00317 345 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 43 329 - -
Pumo1g00317 345 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Pumo1g00317 345 Gene3D - 35 340 IPR038071 -
Pumo1g00317 345 NCBIfam uroporphyrinogen decarboxylase 49 329 IPR006361 GO:0004853|GO:0006779
Pumo1g00317 345 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 329 IPR000257 GO:0004853|GO:0006779
Pumo1g00317 345 FunFam Uroporphyrinogen decarboxylase 38 341 - -
Pumo1g00317 345 SUPERFAMILY UROD/MetE-like 48 329 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00317 Pumo-Chr1 4764751 4768584 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00317 K01599 - gmx:100817154 640.958