Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00307 ATGGCCGATCAGTTATCGAAGGGTGAGGAATTCGAGAAGAAGGCTGAGAAGAAGCTTAGCGGATGGGGCTTGTTTGGCTCCAAATACGAAGATGCTGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCTGGAGCGACTTACCTAAAGTTGGCAAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCATGTTGATGCTGCACATTGCTATAAAAAGACTAATATAAACGAGGCTGTATCTTGCTTAGACCGTGCTGTAAATCTTTTCTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTACGAGGGTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCAAACCAATGCAAACAAAAAGTTGCGCAGTTTGCTGCTCAGCTAGAACAATATCAGAAGTCGATTGAAATTTATGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTATGGAGTTAAAGGACACCTGCTTAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTATTGCTATAACCAATGCATTAGAACGATACCAGGAACTAGATCCAACATTTTCAGGAACACGTGAATATAGATTGTTGGCGGATATTGCTGCTGCACTTGATGAAGAAGATGTTGGGAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTAA 870 0.4172 MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLKLASCHLKLESKHEAAQAHVDAAHCYKKTNINEAVSCLDRAVNLFCDIGRLSMAARYLKEIAELYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRLLADIAAALDEEDVGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00307 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Pumo1g00307 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Pumo1g00307 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Pumo1g00307 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Pumo1g00307 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Pumo1g00307 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Pumo1g00307 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Pumo1g00307 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Pumo1g00307 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Pumo1g00307 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Pumo1g00307 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Pumo1g00307 289 Coils Coil 151 185 - -
Pumo1g00307 289 CDD SNAP 20 278 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00307 Pumo-Chr1 4684319 4688277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00307 K15296 - gmx:100814639 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00307 1 4684319 4688277 Pumo9g02257 9 55821306 55824472 ECH
Pumo1g00307 1 4684319 4688277 Pumo1g00307 1 4684319 4688277 ECH
Pumo1g00307 1 4684319 4688277 Pumo9g02257 9 55821306 55824472 PCT