Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00288 ATGATTCCTCGGGTTCTCGGAGCCTATATAAATCGCCAATTCCTAGTCAATGTTCGAAACATCCTACGTTTCTTTGTTGCAGCAATTCAGACACTGTACCTATTCGTAACCATGTCCAATCCCAAATCCGATTCAGTGTCTGATTCGGAAACTCCACCAACGCAACCATCAGTGCCCATTTCATATCCAATCAAAACTCTTGCGGAGTTGGAGTCTCGCTCGTATTTCGAGTCCTTTCACTACCCTTTCAACAAAGCTTCGGTTCCCATTATTCTCAATGGTGATTCTTCTTCTTCTTCGTTGCCCAACAGGCGCAGATTGCTTGTGTGCCATGACATGGCTGGGGGCTACTTGGATGACAAGTGGATTCAAGGTGGCACCAATCCCGATGCTTATGCCATTTGGCATTGGCATTTGATCGATGTCTTTGTCTACTTTTCACACTCTCTCGTTACTCTTCCTCCTCCTTCATGGACTAACACCGCCCATCGCCATGGTGTTAAGGTGTTGGGGACTTTCATCACTGAATGGGATGAGGGAAAGGCTGCCTGTGATACACTGCTTTCGACAAAGGAAACTGCACATATGTATGCAGAACGTCTGGCAGAGCTTGCTGCTGATTTAGGCTTTGATGGGTGGCTAATAAATATGGAAGTAAATTTGGATCAGGGTCAAATTTCTAATTTGAAAGAGTTTGTAGACCATTTATCATTAACAACGCATTCTTCTGTGCCTGGATCATTAGTGATATGGTATGACAGTGTTACAGTTGATGGTAAATTGAATTGGCAAGATCAACTAAATGAACATAATAAGCCGTTCTTTGATATATGTGATGGAATATTTGTGAACTATACATGGAAGGAAGACTATCCAAGGCTCTCTGCTGCTGTTGCCAGTGATCGGAAGTTCGATGTGTACATGGGAATCGATGTATTTGGAAGGAACACATATGGTGGTGGACAGTGGAATGTAAATGTTGCTCTTGATGTACTAAGAAAGAATGATGTCTCTGCTGCAATATTTGCTCCTAGCTGGGTCTATGAGACAAAGCAAGCACCAGATTTTGAGACTGCCCAGAATAGTTGGTGGGGTCTTGTGGAAAAGTCATGGGGAATACTGCAAGAATTTCCTGGAGTACTACCATTCTACACTAATTTTGATCAGGGACGTGGTTATCATATTTCAGTTGATGGTGATAATGTATCTGATGCTACTTGGTGCAACATTTCTTGCCAAGGCTTTCAGCCACTCCTTGAGTCTGCTGATCCTACAAATTCTATTCAAGTTTCTGCAGACTTGAAGGAAGCATCATATAGTGGAGGGGGAAACATTACATTCAAAGGATCCCTTGAAGAGCAAACTTACTTTGAGAGCAAAATCTTTCAAGGAGAGTTTCTTCTGAGCGATTTGCCTATCCACTTTATTTATTCTGTGAAATCTGATGGCAATTCTTCATTGGGACTTAAGCTCGAGTTCACTTCCACTGGCGACCAAAGAGCATCTGTACTTCTCACATCCCGGAAAGTGGATCGTTTCTCAAGCAAATTCAGCAATGTAATCATGACACATGAACATAAGGGATTATCCTCTGGATGGGTTATAAATGAAGGTGTAGTAGGTGCAATGAATGGATACACTTTAACAGAAATCCATGCAGTGTGCTATAGATCAGAATCAAATGGCAATGATGAAACTGTGGCTTCCCCATCAGATTATTTTGCACTTCTTGGTCATATCACAATCAAGACTTCTGACTACAAGTCAGATTTTCCTGTGTCTTCTTCCTGGATAGTTGATGGCAGCTGCATAAAATGGACATCAGATCCTCTGGGTTCAAAGACCCTTGATGTCAAAATTTCTTGGAAACTAAAAAATGGACAGAATTTTCTATTTCTAAAGTACAACGTGTACCTGGTAAAATTATTAAAACAAGCAGATGGTAATCCAGGCACAACAATAGAGGATGTGAAGGAGTACCTTGGAGTAGCACAAGTAAATTGTTTTTATGTTTCTGACCTCAAAGTTCCTTCAGACACTACTACTAGTCTCAAATTTATAATACAAGTCTGCGGTGTAGATGGGACCATTCAAGAATTGGATGAGTCCCCATATTATCAATTGGAGGTTGAAGGTCCCTAA 2142 0.4136 MIPRVLGAYINRQFLVNVRNILRFFVAAIQTLYLFVTMSNPKSDSVSDSETPPTQPSVPISYPIKTLAELESRSYFESFHYPFNKASVPIILNGDSSSSSLPNRRRLLVCHDMAGGYLDDKWIQGGTNPDAYAIWHWHLIDVFVYFSHSLVTLPPPSWTNTAHRHGVKVLGTFITEWDEGKAACDTLLSTKETAHMYAERLAELAADLGFDGWLINMEVNLDQGQISNLKEFVDHLSLTTHSSVPGSLVIWYDSVTVDGKLNWQDQLNEHNKPFFDICDGIFVNYTWKEDYPRLSAAVASDRKFDVYMGIDVFGRNTYGGGQWNVNVALDVLRKNDVSAAIFAPSWVYETKQAPDFETAQNSWWGLVEKSWGILQEFPGVLPFYTNFDQGRGYHISVDGDNVSDATWCNISCQGFQPLLESADPTNSIQVSADLKEASYSGGGNITFKGSLEEQTYFESKIFQGEFLLSDLPIHFIYSVKSDGNSSLGLKLEFTSTGDQRASVLLTSRKVDRFSSKFSNVIMTHEHKGLSSGWVINEGVVGAMNGYTLTEIHAVCYRSESNGNDETVASPSDYFALLGHITIKTSDYKSDFPVSSSWIVDGSCIKWTSDPLGSKTLDVKISWKLKNGQNFLFLKYNVYLVKLLKQADGNPGTTIEDVKEYLGVAQVNCFYVSDLKVPSDTTTSLKFIIQVCGVDGTIQELDESPYYQLEVEGP 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00288 713 Gene3D Glycosidases 54 376 - -
Pumo1g00288 713 FunFam cytosolic endo-beta-N-acetylglucosaminidase 53 376 - -
Pumo1g00288 713 PANTHER ENDO BETA N-ACETYLGLUCOSAMINIDASE 40 707 IPR032979 GO:0033925
Pumo1g00288 713 CDD GH85_ENGase 108 426 - -
Pumo1g00288 713 Pfam Glycosyl hydrolase family 85 117 394 IPR005201 GO:0005737|GO:0033925
Pumo1g00288 713 Gene3D - 380 582 - -
Pumo1g00288 713 FunFam Cytosolic endo-beta-N-acetylglucosaminidase 1 isoform A 380 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00288 Pumo-Chr1 4481024 4487234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00288 4 712 Glycoside Hydrolase AT3G11040 50.804 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00288 K01227 - gmx:100804658 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00288 1 4481024 4487234 Pumo1g00288 1 4481024 4487234 ECH