Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo1g00270 | ATGGCGGCCGCCAACGCTCCGATCGCCATGAGAGAAGCTCTCACTTTGCCGAGCATTGGCATAAATCCGCAGTTCATCACGTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCGCAGAATAGTGTGGTTATCATTGATATGAACATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGCAGATTCCGCTCTTATGAATCCGAATTCCAGAATCCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCCGAGCAGGTGGTCTTTTGGAAGTGGATTACCCCCAAGTTGTTGGGTCTTGTGACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCGAATTTGGCAAACAATCAAATAATTAATTATCGATGCGATCCTTCTGAAAAATGGTTGGTCTTGATAGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTATTCTCTGTGGATCAACAGCGGAGCCAGGCTCTTGAAGCGCATGCTGCATCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTACTTTGATTTCTTTTGCCACCAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGGGAAGCCATCGTTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACGAAACTTGGTCTCCTATTTGTCTACGATTTGGAGACTGCTACAGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCAGTTGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACAATTGTGAATTTTGTCAGTGGTCAACTAAACAATTTGGAGCTAGCAGTTAGTCTCGCCAAGCGAGGAAATCTTCCTGGTGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGTACACCTGATACAGTTGCCAAATTCCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTAACAAGAGGAAAGCTGAATGCCTTTGAGTCGTTAGAATTGTCACGGCTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAAGAGCTAGGAGATCTTGTAAAGGTTGGGTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAATCTGATCCGTGAGGCAACAGCCTTTCTCCTAGATGTTCTGAAACCAAATCTACCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAATGGCATGTTCAGCCATTATGATCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAGTAATGACTCAACAAATTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACGAAGAACTTCCTAATGGAAGTTAAGCTTCCAGATGCACGACCTCTGATTAATGTTTGTGACCGATTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTTTTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCACGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATCTGCAGAATCTGCTTATTTTAACGGCGATAAAGGCTGATCCATCCAGAGTTATGGATTATATTAATAGACTTGATAATTTTGATGGACCTGCAGTTGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTCCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCCATTGAGTCCTTCATACGAGCAGATGATGCCACACAATTTTTGGATGTTATCCGTGCTGCTGAAGATTCCAATGTTTACCATGACTTGGTTAGATACTTGCTGATGGTAAGGCAGAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCGTATGCAAAGATTGATAGGCTCAGTGACATTGAGGAATTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTGTATGATGAAGAACTATATGAGGCTGCAAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAGTTCCAGGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCGTGTGTTGACGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGGCTTAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGTATCTTCACTGAGTTAGGAGTTCTGTATGCTAGATATCGTCCTGAGAAGCTTATGGAGCATATCAAACTATTTGCGACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGATGGAGCTGACCTATTTGTACATCCAATATGATGAGTTCGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTAGAGTTGTATTACAAGGCTGTTCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGTAACAACGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCATATATTTACAAGAAGGCAGGTAGATGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGACCGTGAACTAGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAAGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATATCTTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCGCAGATCCAAGTGAAGGCTAAAGAGCAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCCGGAATGGTAGGAGGCTTTGCCCCTCCCCCACCAATGGGTGGATTGGGGATGCCTCCAATGCCTCCTTTTGGTATGCCACCCATGGGCAGCTATTGA | 4389 | 0.4249 | MAAANAPIAMREALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQVMTQQIEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEVKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDSNVYHDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWMELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYILQFIREYTGKVDELVKDKIEAQIQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMVGGFAPPPPMGGLGMPPMPPFGMPPMGSY | 1462 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo1g00270 | 1462 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 512 | 715 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 904 | 1045 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Gene3D | - | 1 | 377 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Pumo1g00270 | 1462 | Gene3D | Tetratricopeptide repeat domain | 959 | 1298 | IPR011990 | GO:0005515 | |
| Pumo1g00270 | 1462 | Gene3D | Tetratricopeptide repeat domain | 814 | 958 | IPR011990 | GO:0005515 | |
| Pumo1g00270 | 1462 | FunFam | Clathrin heavy chain | 1304 | 1400 | - | - | |
| Pumo1g00270 | 1462 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 720 | 900 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Coils | Coil | 1386 | 1406 | - | - | |
| Pumo1g00270 | 1462 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 765 | 1260 | - | - | |
| Pumo1g00270 | 1462 | PIRSF | CHC | 3 | 482 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Pumo1g00270 | 1462 | PIRSF | CHC | 480 | 610 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Pumo1g00270 | 1462 | PIRSF | CHC | 602 | 768 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Pumo1g00270 | 1462 | PIRSF | CHC | 766 | 1438 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Pumo1g00270 | 1462 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1199 | 1342 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1050 | 1196 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Gene3D | - | 1304 | 1399 | - | - | |
| Pumo1g00270 | 1462 | SUPERFAMILY | ARM repeat | 457 | 666 | IPR016024 | - | |
| Pumo1g00270 | 1462 | Coils | Coil | 1239 | 1259 | - | - | |
| Pumo1g00270 | 1462 | FunFam | Clathrin heavy chain | 814 | 958 | - | - | |
| Pumo1g00270 | 1462 | Pfam | Clathrin-H-link | 369 | 434 | - | - | |
| Pumo1g00270 | 1462 | SUPERFAMILY | ARM repeat | 958 | 1293 | IPR016024 | - | |
| Pumo1g00270 | 1462 | FunFam | Clathrin heavy chain | 1 | 377 | - | - | |
| Pumo1g00270 | 1462 | Pfam | Clathrin, heavy-chain linker | 344 | 367 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Pumo1g00270 | 1462 | SMART | CLH_2 | 904 | 1045 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | SMART | CLH_2 | 1050 | 1196 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | SMART | CLH_2 | 1199 | 1358 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | SMART | CLH_2 | 753 | 900 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | SMART | CLH_2 | 573 | 715 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | SUPERFAMILY | ARM repeat | 814 | 957 | IPR016024 | - | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 908 | 1043 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 607 | 713 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 518 | 603 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 768 | 893 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 1202 | 1341 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | Pfam | Region in Clathrin and VPS | 1054 | 1193 | IPR000547 | GO:0006886|GO:0016192 | |
| Pumo1g00270 | 1462 | FunFam | Clathrin heavy chain | 959 | 1298 | - | - | |
| Pumo1g00270 | 1462 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 5 | 343 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Pumo1g00270 | 1462 | SUPERFAMILY | ARM repeat | 768 | 829 | IPR016024 | - | |
| Pumo1g00270 | 1462 | SUPERFAMILY | ARM repeat | 345 | 481 | IPR016024 | - | |
| Pumo1g00270 | 1462 | Pfam | Clathrin propeller repeat | 20 | 56 | IPR022365 | - | |
| Pumo1g00270 | 1462 | Pfam | Clathrin propeller repeat | 154 | 197 | IPR022365 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo1g00270 | Pumo-Chr1 | 4274170 | 4286300 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo1g00270 | K04646 | - | gmx:100802224 | 1256.51 |