Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00242 ATGTTACCCCAGAAGCAAGCTGAAGAAGCCATGATGTCAAGCCTCACCCAAACAATGGAGCGTGAGGAGGGAGAGGAAGTGAAAGGGGAGACATCACATTTTAGCTTAAAAAATGTTCTCTGGCATGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGTTGCTCAGGTTCTGTTGACTCTGCCTTACTCTTTCTCTCAGCTGGGAATGCTTTCAGGCATCATATTCCAAGTGTTCTATGGCTTGCTTGGGAGTTATACTGCTTATTTAATTAGCATTCTGTACATTGAGTACAGAAGCCGGAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATCCAGTGGTTTGAAGTGTTGGAAGGCTTACTTGGTCCATACTGGAAAGCTATCGGATTGGCCTTCAACTGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAGTAATATATACTACATAAATGATCACTTGGACAAGAGGACTTGGACCTACATATTTGGAGCTTGCTGTGCCACCACAGTGTTCATTCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCCTTGTTCATGGCCAGGTTGAAAATGTGAGGCATTCGGGCCCAAACAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAGCCTCAGAAGTTCAAATATATATATCTTTATGCAACAATTTATGTGTTCACCCTCACTCTACCATCTGCTATTGCCGTTTACTGGGCCTTTGGTGACCAACTTTTGGATCACTCCAATGCCTTCTCACTCCTCCCTCGCTCTGGCTGGCGTGACACTGGTGTCATCCTAATGCTCATTCACCAGTTCATCACATTCGGGTTTGCTTGTACGCCATTGTATTTCGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCTCTAGCCCGGTTACCTGTGGTGATACCAATATGGTTTTTGGCCATTATTTTCCCTTTCTTTGGGCCCATTAATTCAGCTGTGGGGGCCCTTTTGGTCAGCTTCACCGTTTACATCATTCCTGCTTCTGCCCATATGCTTACCTACAGATCTGCCTCCGCAAGACAGAATGCCGCAGAGAAATTGCCCTTCTTTATCCCTAACTGGACGGTGATGTACGTGGTGAATGCATTTGTGGTGGTGTGGGTTCTGGTGGTGGGCTTTGGATTTGGAGGGTGGGCCAGCATGACAAATTTCATCAAACAGGTTGACACATTCGGACTATTTGCCAAGTGCTACCAATGCCCGCCCAAAGTCCTACCCTCCAACCACACCTTGCATCACTGA 1437 0.4649 MLPQKQAEEAMMSSLTQTMEREEGEEVKGETSHFSLKNVLWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQVFYGLLGSYTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAALVHGQVENVRHSGPNKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLYATIYVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRSGWRDTGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPASAHMLTYRSASARQNAAEKLPFFIPNWTVMYVVNAFVVVWVLVVGFGFGGWASMTNFIKQVDTFGLFAKCYQCPPKVLPSNHTLHH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00242 478 PANTHER OS05G0424000 PROTEIN-RELATED 48 429 - -
Pumo1g00242 478 Coils Coil 5 25 - -
Pumo1g00242 478 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00242 Pumo-Chr1 3694635 3700243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00242 4 465 Organic Solute Cotransporters AT2G21050 76.623 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00242 K13946 - gmx:100795466 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00242 1 3694635 3700243 Pumo1g00242 1 3694635 3700243 ECH
Pumo1g00242 1 3694635 3700243 Pumo9g02337 9 56677968 56682035 ECH
Pumo1g00242 1 3694635 3700243 Pumo9g02337 9 56677968 56682035 PCT