Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00220 ATGCCAAAAGGGATGGCTTCAGTCACCACATTTTCACTAATGTTACAGTTTCTGTTCTTAATATTATGTTCTTCGTTTGGTCAGCTAAGCTTAGCTTTCACATGGCAAGAGTACCATGAGGCTCTTGAGAAATCCATTCTCTTCTTTGAGGGACAACGATCTGGAAAATTGCCTTCCAACCAGCAACAAACATGGAGGGGAGATTCTGGATTGTCCGATGGCTCTTCTTATCATGTGGACCTAGTAGGCGGTTATTATGATGCTGGAGACAACGTCAAGTTTGGGCTGCCAATGGCCTTTACCACTACGTTATTAGCATGGAGTGTGATTGAATTTGGAAGTTCAATGCAGGACCAAATTGAAAATGCCAGAGCTGCTATCCGGTGGAGCACGGATTACCTTCTTAAGGCAGCCACCACCACCCCTGACACGTTATATGTCCAAGTAGGAGACCCGAACATGGATCACAGGTGTTGGGAAAGGCCTGAAGATATGGACACTCCACGCAACGTGTATAAGGTATCAGCTCAAAACCCAGGATCGGATGTAGCAGCAGAGACGGCAGCTGCATTGGCAGCTTCTTCAATAGTATTCAGAGATTCGGATCCCAGCTATTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCACTTTTGCAGACCGTTACAGGGGTTCTTACAGTGACTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCAGGATACCATGATGAGCTTCTGTGGGGTGCATCATGGATTTATAAAGCCTCGGGAATTAGCTCTTACATACAATATATACAATCCAATGGCCACATATTAGGCGCTGATGACGATGGTTACACCTTCAGTTGGGATGACAAGAGACCTGGAACAAAAATCCTGCTTTCCAAGGAATTCCTGGAGAAAAATTCTGAAGAGTTCCAATTATATAAGGCACATGCAGACAATTACATTTGTTCGCTAATGTCGGGAACACCCGGTTTCCAGGCTCAGTACACCCGAGGGGGGCTTCTGTACAAAGGGAGTGAGAGCAATTTGCAGTACGTGACATCGACTAGCTTCCTTCTCTTGACATACGCCAAGTATCTGAACGCAAACGGGGGCGCTGTCCGATGTGGGACTTCAGCGGTCACGGGCCAAAACCTCGTAACACTAGCCAAAGCACAAGTTGATTACATTTTGGGCAATAATCCAACAAAGATGTCTTATATGGTGGGTTTTGGGGAGAGGTATCCAAAGCATATCCACCACAGGGGTTCCTCTCTGCCTTCCATTCACTCACATACTCAACACATTTCCTGCAACGACGGGTTTCAGTATTTCCATTCTGGGTCACCCAATCCAAATGTCCTTGTTGGAGCCATAGTAGGTGGTCCTGATAACAACGACAATTTCTCTGATGATAGACATAACTATCAGCAGTCAGAGCCAGCAACATATATCAATGCGCCGTTTGTAGGTGCTCTTGCCTATTTCTCTGCCGAACCACCAACCTATTAG 1509 0.4573 MPKGMASVTTFSLMLQFLFLILCSSFGQLSLAFTWQEYHEALEKSILFFEGQRSGKLPSNQQQTWRGDSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMQDQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNMDHRCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFRDSDPSYSSKLLQAAIKVFTFADRYRGSYSDSLNSVVCPFYCSYSGYHDELLWGASWIYKASGISSYIQYIQSNGHILGADDDGYTFSWDDKRPGTKILLSKEFLEKNSEEFQLYKAHADNYICSLMSGTPGFQAQYTRGGLLYKGSESNLQYVTSTSFLLLTYAKYLNANGGAVRCGTSAVTGQNLVTLAKAQVDYILGNNPTKMSYMVGFGERYPKHIHHRGSSLPSIHSHTQHISCNDGFQYFHSGSPNPNVLVGAIVGGPDNNDNFSDDRHNYQQSEPATYINAPFVGALAYFSAEPPTY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00220 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
Pumo1g00220 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Pumo1g00220 502 Pfam Glycosyl hydrolase family 9 38 492 IPR001701 GO:0004553|GO:0005975
Pumo1g00220 502 FunFam Endoglucanase 34 499 - -
Pumo1g00220 502 Gene3D - 35 500 IPR012341 GO:0005975
Pumo1g00220 502 SUPERFAMILY Six-hairpin glycosidases 34 497 IPR008928 GO:0005975
Pumo1g00220 502 PANTHER ENDO-1,4-BETA-GLUCANASE 20 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00220 Pumo-Chr1 3448668 3451588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00220 36 496 Glycoside Hydrolase AT1G02800 66.161 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00220 - - gmx:732658 978.393