Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00163 ATGTCCTCCATTCTTCTCCTCCTCCCTCTTCTTCATCCTCTTACAATTACCCTTTTCACCGTTTTCCTCCAAATCCAAACCACTTGTTCTCTCTCCTCTTCCCCCCAAACCCCAATCATATTGCCTCTAAAAACCCAAACACTCCCACATGCCATAGTTTCACTTCCAAAGCCATCTTCACGTAAGGTCTCGTTCCACCACAACGTAACCTTAACCGTTTCTCTAACCGTAGGCACGCCCCCACAGAGCGTTACCATGGTCCTCGACACAGGCAGCGAACTCTCCTGGCTCCACTGCAGAAAAAACCAAAACATAAACTCAATCTTCAACCCACACCTCTCTTCCTCTTACACCCCCACACCCTGCATGTCACTTGTCTGCAAAATTCGAACTCGAGACTTTTTCATACCCGTTTCATGCGACTCCAATAAACTCTGCCACGCCACCGTCTCCTACGCTGACGTCACTTCCATCGAGGGCAACCTCGCCGCCGACACGTTCTCCATCTCCGGATCGGGTCAACCCGGAGTTATATTCGGGTGCATGGACTCCGGGTTTAGCTCCAACACAAACGAAGACTCCAAAACAACCGGGTTAATGGGCATGAACCGCGGGTCGCTCTCGTTTGTGACCCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGCCACGATGCCTCCGGCGTGTTACTCTTCGGCGACGCCACGTTCAAATGGCTCGGACCGTTAAAGTACACGCCTTTGGTTAAAATGAATACCCCATTACCCTACTACGACCGTGTCGCGTACACGGTTCGGTTGATGGGTATTCGGGTCGGGTCAAAACCGTTGCAAGTTCCAAAGTCAATTTTCGCGCCGGATCATACCGGGGCGGGTCAGACCATGGTGGATTCGGGTACGCAATTCACCTTTCTTCTCGGGTCGGTTTACACTGCTTTAAGGAACGAGTTTGCGGCGCAGACAAGAAGGGTTTTGACCCTTTTGGAGGATCCGAATTTTGTGTTTGAAGGGGCGATGGATTTGTGCTTTAAGGTTAGAGGGGGTGTTGTGCCGGCAATGCCGGCGGTGACGATGGTGTTTGAAGGGGCGGAGATGATTGTATCCGGGGAAAGGTTATTGTATCGGGTGAGTGGTGACGTGGCGAAGGGGAATGGTGACGTGTATTGTTTCACGTTTGGGAATTCTGACTTGTTGGGGATTGAGGCTTACGTGATTGGACACCATCATCAACAGAACGTGTGGATAGAGTTTGACTTGGTCAACTCTCGAGTTGGATTTGCTGACACGAGGTGTGAACTTGCAAGTCGAAGACTTGGCTTGGGTTCTTAG 1332 0.5098 MSSILLLLPLLHPLTITLFTVFLQIQTTCSLSSSPQTPIILPLKTQTLPHAIVSLPKPSSRKVSFHHNVTLTVSLTVGTPPQSVTMVLDTGSELSWLHCRKNQNINSIFNPHLSSSYTPTPCMSLVCKIRTRDFFIPVSCDSNKLCHATVSYADVTSIEGNLAADTFSISGSGQPGVIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISGHDASGVLLFGDATFKWLGPLKYTPLVKMNTPLPYYDRVAYTVRLMGIRVGSKPLQVPKSIFAPDHTGAGQTMVDSGTQFTFLLGSVYTALRNEFAAQTRRVLTLLEDPNFVFEGAMDLCFKVRGGVVPAMPAVTMVFEGAEMIVSGERLLYRVSGDVAKGNGDVYCFTFGNSDLLGIEAYVIGHHHQQNVWIEFDLVNSRVGFADTRCELASRRLGLGS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00163 443 Gene3D Acid Proteases 241 436 IPR021109 -
Pumo1g00163 443 FunFam Aspartic proteinase PCS1 239 436 - -
Pumo1g00163 443 SUPERFAMILY Acid proteases 72 432 IPR021109 -
Pumo1g00163 443 CDD pepsin_A_like_plant 70 432 IPR034161 -
Pumo1g00163 443 Gene3D Acid Proteases 57 235 IPR021109 -
Pumo1g00163 443 PANTHER ASPARTYL PROTEASE-RELATED 18 432 IPR001461 GO:0004190|GO:0006508
Pumo1g00163 443 Pfam Xylanase inhibitor N-terminal 73 235 IPR032861 -
Pumo1g00163 443 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 86 97 IPR001969 GO:0004190|GO:0006508
Pumo1g00163 443 FunFam Aspartic proteinase PCS1 62 235 - -
Pumo1g00163 443 ProSiteProfiles Peptidase family A1 domain profile. 71 428 IPR033121 -
Pumo1g00163 443 Pfam Xylanase inhibitor C-terminal 263 428 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00163 Pumo-Chr1 2705904 2707972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00163 39 433 Miscellaneous Gene Families AT1G44130 22.619 2.27e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00163 - - gmx:100783835 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00163 1 2705904 2707972 Pumo1g00163 1 2705904 2707972 ECH