Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00131 ATGGAAGAAAGCCCTCGTGCTAGCAGAAAGCGAGCACAGCCTTCTTCTTCTTCTTCTCCTTCTCCACCAATCTCCAAGAAGCCCCAAAACTTCCCTTCCTTCCAAGACATCCCCAACCTCCCTTCCAACATCAAATCCCTCTGCCACCTCATCGCCACCACCTCCGCCGCCACCGTCGAGCTCTCCCTCCAATCCGCCGCCATCCCCGTCGCCCCTCACGACGTCGAGGAAGTCCTCAAACTCTCCTACGGCTTCCCCGGCCAGGCCGTCAAATTCTTCCGCTGGAGCGGCCGCCACCTCAACGACAACCACACGCCCTATTCCTGGAACCTCGTCGTCGACATCCTCGGAAAAAACCGCTTCTTCGACGCAATGTGGGACGCTATTAAGTCAATGAACAAAGAACGGTTGCTTTCACTCGCCACATTCGCATCCGTTTTCAGCAGCTATGTTGCAGCTGACAGAATCCGGGAGGCAATTATGGCGTTTGAAATTATGGACAATTACGGCTGTGTGAGGGATGTAGTTGCTTTGAATTCGCTTTTGAGTGCAATTTGTAGCAATGCTAGGACTGTTGATGCTTGTGATTACTTGCAGGTTGCTAAGAAATTGGTCCGGCCGGATGCCGATACCTACGCGATTTTAATGGAGGGGTGGGAAGGGGAGAGGGACAAGGAAAAGGGTGTGGTTGGTGCAAAGGAGACATTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGTCAATGTACCTGCTTATGATTCCTTTTTGTGTACCCTTGTTAGAGGGCCTGATGGATTGCTTGAGGCTATTAAGTTTGTTGATTCAATGAGGGATAGGAGGTGTTACCCTGGTGTCAGGTTTTTGAAGGTTGCATTGGATGAGTGTGTCAAGTGTCATGATGTTAGGACTGCTGAGTTTTTCTGGGAGGTGGTGGGGAAGGTCTTGCAGCCCACCACTGAGATGTATAATTTGATGATTGGTTTGTATTGCTATCGTGGTGATACTGATGCTGCGAGGAGGATGCTTGATGAGATGGTTTACCAAGGGGCTTTTCCTGATGTGGTGACTTATAACTTGCTCTTCAAGTTCTTGATCAAGGGGAGGAAGTTGAGGGAGGCTTCCGCGGTGTTTGCTGAGATGGTGAAGAATGAGTGTGTGCCGGAGCAGGATAATTGTGATGCAGCGGTTAAGGCCTATGTGGATTGTGGGGAGCCTGTCATGGCGACGAAGGTTTGGAAGTGTTTGGTGGAGAATTATAACAAGGATTTGGAGCGGACGGCGAATTTTCTGGTTGTGGGGCTTCGCGATTTGAACAGGCTCCAGGAGGCGGTTAAGTATGCTGAGGATATGATTGGCAGGGGAATCAGGTTGTCCTCTTCCACATTGTCGAAGCTGAGACAAAGCCTTGTCAAGGAGAGAAGAGAATTTGTGTATGAAGATCTTTTGAGAAAGTGGAAATCTCAGTAG 1470 0.4973 MEESPRASRKRAQPSSSSSPSPPISKKPQNFPSFQDIPNLPSNIKSLCHLIATTSAATVELSLQSAAIPVAPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMNKERLLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVRDVVALNSLLSAICSNARTVDACDYLQVAKKLVRPDADTYAILMEGWEGERDKEKGVVGAKETFAEMVIEIGWDPVNVPAYDSFLCTLVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKVALDECVKCHDVRTAEFFWEVVGKVLQPTTEMYNLMIGLYCYRGDTDAARRMLDEMVYQGAFPDVVTYNLLFKFLIKGRKLREASAVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMATKVWKCLVENYNKDLERTANFLVVGLRDLNRLQEAVKYAEDMIGRGIRLSSSTLSKLRQSLVKERREFVYEDLLRKWKSQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00131 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Pumo1g00131 489 MobiDBLite consensus disorder prediction 10 32 - -
Pumo1g00131 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Pumo1g00131 489 MobiDBLite consensus disorder prediction 1 32 - -
Pumo1g00131 489 NCBIfam pentatricopeptide repeat 322 354 IPR002885 -
Pumo1g00131 489 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Pumo1g00131 489 NCBIfam pentatricopeptide repeat 142 175 IPR002885 -
Pumo1g00131 489 Gene3D Tetratricopeptide repeat domain 267 432 IPR011990 GO:0005515
Pumo1g00131 489 Gene3D Tetratricopeptide repeat domain 82 240 IPR011990 GO:0005515
Pumo1g00131 489 Pfam PPR repeat family 318 365 IPR002885 -
Pumo1g00131 489 Pfam PPR repeat 142 171 IPR002885 -
Pumo1g00131 489 Pfam PPR repeat 107 135 IPR002885 -
Pumo1g00131 489 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 11 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00131 Pumo-Chr1 2283522 2285344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00131 103 475 Glycosyltransferase AT1G05670 23.206 1.68e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00131 - - gmx:100784707 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00131 1 2283522 2285344 Pumo1g00131 1 2283522 2285344 ECH