Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00119 ATGGCCATGCGCTTTCTTCTGCTTCTTTTTGCAGTATATGTTGCTGCTATTGATGAAGAACCATTTATAGGGGTGAATATTGGAAGAGATCTCTCAGATATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCCCAGCAAATTCGACATGTTAGGTTGTATGATGCTGACCAAGCTATGCTCATTGCTCTTGCAAACACAGGAATTCAAGTTGCTGTGTCTGTCCCTAATCAAGAGATCCTAGCAATTGGTCAATCAAATACCACAGCTGCAAAATGGGTTTCCCATAATGTGATAGCACATTACCCTGCCACTAACATAACATCTATTTGTGTTGGTTCTGAGGTTTTAACTACCCTCCCCAATGCAGCAAAAGTGCTTGTCAGTGCCCTTAAGTTCATTCATTCAGCCCTTGTGGCATCCAACCTTGATCACCAAATCAAAGTTTCAACACCCCTTTCCTCTTCCATGATCCTTGACTCATTTCCACCTTCACAAGCCTTCTTTAACCGCTCTCTGAATCCAGTCTTGGTTCCAATGCTTGATTTCTTGCAAACCACTGGCTCTTATCTTATGCTCAACATATACCCTTACTATGACTACATGCAGTCAAATGGTGTGATTCCATTGGATTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGCCATTGATTCTAACACCCTTCTCCACTACTCCAACGTGTTTGATGCTGTGATTGATGCAGCATACTTTGCCATGGCTTTTCTCAATTACACTAACATTCCTGTGGTGGTGAGTGAAACAGGTTGGCCCTCAAAAGGTGACTCTAATGAACCAGATGCAACAGTAGAAAATGCAAACACTTACAACAGCAATTTGATCAAGCATGTGCTAAACATAACTGGAACTCCCAAACACCCCGGAATCGGTGTTAGTACTTACATCTATGAGCTCTACAATGAGGATGCAAAGGCAGGGCCATTGTCAGAGAAGAACTGGGGTTTGTTTGATGCAAATGGGAAACCTGTTTATCTTTTACACTTGACAGAATCAGGAGGAGTGTTGGCAAATGACACCACTAATCAAACTTATTGTGTTGCAAAGGATGGTGCTGATCCTAAGATGCTGCAGGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGCTTTCCTTTGCTGCAAGGACAACCATGTTATGAACCAGACAATGTGGTTGCACATGCAGATTATGCTTTTGATACTTACTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACCAATCCAAGTCATGGATCCTGTGTATTTCCAGGAAGTCTTGGCAACAATGGCACCTTCCCAAACGTCACGTTATCATCAATGAATTCCACTAATTCAGATTCTTCTGCCTGCAATCTCCATCGTGGTGAACTGGGAATTAGAAGCCTTCTAATGATGATAGCACTTCTACTATGGGGAGTGATTTTGCTATAA 1497 0.4275 MAMRFLLLLFAVYVAAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTGIQVAVSVPNQEILAIGQSNTTAAKWVSHNVIAHYPATNITSICVGSEVLTTLPNAAKVLVSALKFIHSALVASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMLDFLQTTGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAIDSNTLLHYSNVFDAVIDAAYFAMAFLNYTNIPVVVSETGWPSKGDSNEPDATVENANTYNSNLIKHVLNITGTPKHPGIGVSTYIYELYNEDAKAGPLSEKNWGLFDANGKPVYLLHLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCFPLLQGQPCYEPDNVVAHADYAFDTYYHQMGKSPQSCDFNDMATISTTNPSHGSCVFPGSLGNNGTFPNVTLSSMNSTNSDSSACNLHRGELGIRSLLMMIALLLWGVILL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00119 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Pumo1g00119 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 432 IPR044965 GO:0004553|GO:0005975
Pumo1g00119 498 FunFam Glucan endo-1,3-beta-glucosidase 3 22 347 - -
Pumo1g00119 498 Gene3D - 353 445 - -
Pumo1g00119 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Pumo1g00119 498 Gene3D Glycosidases 22 349 - -
Pumo1g00119 498 SMART X8_cls 359 444 IPR012946 -
Pumo1g00119 498 FunFam Glucan endo-1,3-beta-glucosidase 4 354 448 - -
Pumo1g00119 498 Pfam X8 domain 360 431 IPR012946 -
Pumo1g00119 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00119 Pumo-Chr1 2092279 2095804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00119 18 490 Glycoside Hydrolase AT1G66250 72.211 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00119 K19891 - gmx:100811077 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00119 1 2092279 2095804 Pumo1g00119 1 2092279 2095804 ECH