LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00115	ATGGCCGTTCGAGAGGAGCAAGTCATGGAGGAGAACGACGCAGAACAAGCGAAGCCGTTGATGCTGAAAATCGCCGCGATTCTCGACGAGGCTCGAACCTCATACGCCACACACAACCGAAAGCTCAAGGAATTGGCACTTCTCCGATCCAAATCCTCTTCTCATTCGCACTTCTTCTCCGCCTTATCCAAAACCCTAACTCCTCTCTTCGACTTCCAGAGGCGCCTCGCCTCTGCCGACCGCGTTGTCTCCTTCGTCTCCGCCTTCGCTGCTGCCACCGCCGCAGCCTCCGACGAGTTCCTCGACCACTTCCTCAAGTTCCTCCTGGTTGCCGCGGCGGCATCCAACAAAACCGCTAGGTTCCGAGCTTGCCAGATCGTTTCCGAGATAATATTGCGGCTGCCTGATGAGGCAGAAGTGAGCAATGAGCTATGGGATGAGGTGATAGAGTGGATGAAGGTGAGGGTGCGAGACAAGATCCCTTTGGTGCGTACTTTTGCGGTTAGAGCGCTTTCGCGCTTTGTGAATGACTCTGTGAACAGTGACATCCTTGATTTGTTCCTCGAGGTGCTTCCTTTGGAACAGAATGCGGATGTTCGTAAGATGATTGTGTTATCTTTGCCTCCTTCTAGTGCAACCTCTCAAGTTATCATTGATTGTACCTTGGATGTGAGTGAATCTGTACGCAAAGCAGCATACTGTGTTCTAGCTAATAAATTTCCTCTTCAAAGCTTAAGCATTAAACTCAGGACAGTAATTCTTCGGAGAGGACTTGCTGACCGGTCTGTTGCTGTCTCAAAGGAATGTTTTAAACTATTGAAAGATGAATGGCTTATGAAGTGTTGTAATGGTGATCCTTTAGAACTTTTGAAGTATCTTGATGTTGAAACCTATGAATCAGTTAGTGAGTCTTTAATGGAGGCACTTCTTAAAGCTGGTTTAGTAAAACTACATAATGGTGCAAGTATCCAGCAATACATATCATCAAATGGTGACAGGACAGAAGGGGATTCAGTTCATTGCCCACCAAGCATTCAGCTGATGGAAGCAGAGGCTGCTCTTTATTGGAGAACTGTTTGCAAGCATTTACAGTCAGAAGCACATGCCAAAGGCTCTGATGCTGCAGCAACAATGGGCACTGAAGCAGAGGTATATGCAGCAGAAGCATCAGATAAAAATGACCTTCTAGAAAAAATTCTTCCTGCAACAGTCGATGAATATATAGAATTGGTCAGAGCTCATACTAATGCAGGATCAAACCATCGTTTTGCATGCCGGCAGCTGCTTTTGCTTGGTGCCATGTTTGATTTTTCTGATGTTACAAATAGAAAGGCTGCTGGTGCATTTCTGCATGAGCTTATGTGCAAGCCTCTTGAGCACGAGGATGATAATGAAGGGAATATAGTTGTTCTTGGAGATGGATTAAGTTTTGGTGGAGATAATGATTGGGCTGAAGCTGTAGCCAGTTTAGCAAGGAAAGTCCATGCTGCTCCTGGTGAATTTGAAGAAGTTGTTCTTGCAATCATAGAAGAGCTTGCCCAACCTTGCAGGGAGAGAACGGCAGATTATGTGCAGTGGATGCACAGCCTCTCTCTTACTGGCCTTTTGCTTAAAAATGCAAAATCACTGCACTTTCTTCAGGGCAAGGCTATTGAACCTGATGAGCTACTCCAATCTTTACTACTACCTGGGGCGAAACAATCTCACTTGGATGTGCAAAGGATTGCAGTTAGATGTCTTGGCCTTTTTGGACTTTTGGAAAGGAAACCAAATGCAGACCTTTTGAAACAGTTGAGGATTTCATATATTAAGGGGCCACATTCAATCAGTATAGAGGCTTGTAAGGCATTAATTGATCTTGTGATGTGGCATGGTCCTCAAGAGGTTGACAAGATGTTAAACCTCAGTATTCCATGCCAATTAAACAGTGACAAGACGACCTTTTCTCCTGTGAACTTTTCTGATTCAGAAGAGGAACTAGATGTTGGGACGCTCGATATCTTATATGGCGGCTTTGAAAATGATGACTGGGCGAGTCCTTTACTTAGCAACGAAGATGAGTGCGTTCATGCCATACTTGGAGAGGGGTTTGCGAAAATTCTTCTCCTAAGTGACAACTATCCAAGCATACCAGTGTCTTTGCATCCTGTTCTTTTATCAAAGCTCAGTTACTTGTATTTCAGTGATGTGTCGGAACACTTGCACAGGTTGAAGCAATGCTTATCTGTTTTCTTTGAGCTTTACCCATGTCTCTCAGCCAATCATAAGAGGTGCATAACGAAGAGTTTCATTCCAGTAATGCGTTCAATGTGGCCAGGAATTTTTGGCAATTCTGCGGGTTCTTCTTTTATGGTGTCTCAGAAGCGTAAACGTGCTGTTCAAGCTTCCCGTTTTATGCTGCAGATGGTGCAGATTCCCTTGTTCGTTAAAGAGTCTCAACCAGATTGTGAAAATACTAGCACGGAACATCCACAAGTCATAGATAGTTGCGCAGAAGTTCCATTTGAATGTGGTGAGGAGGGGCTTGCACTACGCATAGCCGTAGAGGTGGCAAGCTTTCAATCGAAGAAGACAGCTGCTGAGAAGGCATATGTGTCGGCTTTATGTAAAATACTTGTTTTGCTTGAATTTCGGATATCAGAACAAGGGCCAATAAAATTTATGAGGAAGCTTTTATGTCGCGTGGTTGAATGTCTCTCTTCAGAGAAGGATCTTGTTAAGGAATTGAAACGCATGTCTGAACATCTCATGACAGTAGATAGTCAACCAGATCAGGAATTGTTGCAAGATGAAATTAATCTTATTTTGGGGAAATTGGAACTTGACTGCGACCTGGATTTGGATGGTTCTGTTTCAATGCCGCAAACACCAGCTGCACCCCCAACTAGGCCCACACGTTCTAGGAGAAGGGTAAGGATTGAAGAAGAAAGTTCTGATGAAGATTCACCTTCTGTGGTTCCTACCACCCATCATACTGTAATAAGTCGCTCACAGAGAGCAAGCAAAACGGCAGCAATGAACAAGATGTCCTCTGCCACTAGATCGCTCAAAATTGATGAAATGGAAGAACTAGAGGAAGAAGACTCTGATGTGACATCAGAAGATTCTGATGCATCCGATTAG	3123	0.4441	MAVREEQVMEENDAEQAKPLMLKIAAILDEARTSYATHNRKLKELALLRSKSSSHSHFFSALSKTLTPLFDFQRRLASADRVVSFVSAFAAATAAASDEFLDHFLKFLLVAAAASNKTARFRACQIVSEIILRLPDEAEVSNELWDEVIEWMKVRVRDKIPLVRTFAVRALSRFVNDSVNSDILDLFLEVLPLEQNADVRKMIVLSLPPSSATSQVIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKLRTVILRRGLADRSVAVSKECFKLLKDEWLMKCCNGDPLELLKYLDVETYESVSESLMEALLKAGLVKLHNGASIQQYISSNGDRTEGDSVHCPPSIQLMEAEAALYWRTVCKHLQSEAHAKGSDAAATMGTEAEVYAAEASDKNDLLEKILPATVDEYIELVRAHTNAGSNHRFACRQLLLLGAMFDFSDVTNRKAAGAFLHELMCKPLEHEDDNEGNIVVLGDGLSFGGDNDWAEAVASLARKVHAAPGEFEEVVLAIIEELAQPCRERTADYVQWMHSLSLTGLLLKNAKSLHFLQGKAIEPDELLQSLLLPGAKQSHLDVQRIAVRCLGLFGLLERKPNADLLKQLRISYIKGPHSISIEACKALIDLVMWHGPQEVDKMLNLSIPCQLNSDKTTFSPVNFSDSEEELDVGTLDILYGGFENDDWASPLLSNEDECVHAILGEGFAKILLLSDNYPSIPVSLHPVLLSKLSYLYFSDVSEHLHRLKQCLSVFFELYPCLSANHKRCITKSFIPVMRSMWPGIFGNSAGSSFMVSQKRKRAVQASRFMLQMVQIPLFVKESQPDCENTSTEHPQVIDSCAEVPFECGEEGLALRIAVEVASFQSKKTAAEKAYVSALCKILVLLEFRISEQGPIKFMRKLLCRVVECLSSEKDLVKELKRMSEHLMTVDSQPDQELLQDEINLILGKLELDCDLDLDGSVSMPQTPAAPPTRPTRSRRRVRIEEESSDEDSPSVVPTTHHTVISRSQRASKTAAMNKMSSATRSLKIDEMEELEEEDSDVTSEDSDASD	1040

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00115	1040	Pfam	Nuclear condensing complex subunits, C-term domain	529	877	IPR025977	-
	Pumo1g00115	1040	SUPERFAMILY	ARM repeat	99	637	IPR016024	-
	Pumo1g00115	1040	Gene3D	-	62	246	IPR011989	-
	Pumo1g00115	1040	MobiDBLite	consensus disorder prediction	982	1014	-	-
	Pumo1g00115	1040	MobiDBLite	consensus disorder prediction	949	1040	-	-
	Pumo1g00115	1040	PANTHER	CONDENSIN COMPLEX SUBUNIT 3-RELATED	7	1039	IPR027165	GO:0000796\|GO:0007076
	Pumo1g00115	1040	FunFam	ARM repeat superfamily protein	71	250	-	-
	Pumo1g00115	1040	MobiDBLite	consensus disorder prediction	1021	1040	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00115	K06678		-	gmx:100817677	1794.25

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo1g00115	1	1973696	1982345	Pumo1g00115	1	1973696	1982345	ECH