Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00110 ATGTTTTCAAACATGCATCTCTTGTTCTTTTTTCTTCTCACCTCCATACACCTCTCCGCACAACTCAACCACAACTCAACCTCATTCTCACTCTCTTTCCCTCTCACATCACTCCCCCTCTCCACCAACACCACCTCCAAGATGCTTCGCAACTCTCTCCTCATTGCAAACACTAACCACTCACGACTCACATCACCACCTTCCTCTCCGTACAACTACAAGTTGTCTCTCAAATACTCCATGGCTTTAATCGTGAACCTCCCCATTGGTACCCCACCGCAGGTTCAGCCTATGGTCTTGGACACCGGAAGCCAACTCTCCTGGATTCAGTGTCACAACAAAGCACCCGCGAAGCCTCCCCCGACGGCGTCCTTTGACCCTTCTCTCTCTTCCACTTTCTCTATCCTTCCATGTACTCACCCAGTTTGCAAGCCACGAATTCCCGATTTTACCCTCCCCACCTCCTGCGACCAGAACCGCCTCTGCCACTACTCATACTTCTACGCCGACGGCACCTACGCCGAGGGCAATCTCGTCAGAGAAAAATTCACTTTCTCACGTTCCCTTTTTACCCCTCCTTTAATCCTCGGTTGCGCCACGGAGTCCACCGACCCCAGGGGCATTTTGGGAATGAACCGCGGACGCCTTTCCTTCGCTTCGCAGTCCAAAATTACAAAATTCTCTTACTGTGTTCCCACCCGCGAGACCCGACCCGGCTATACTCCAACCGGGTCGTTCTACCTTGGCAACAACCCGAATTCTAACACGTTTCGGTATATCGAAATGTTGACTTTTGCTCAGAGTCAACGCATGCCGAATCTCGACCCCTTGGCCTACTCCGTCGCCTTGCAGGGGATAAGAATCGGAGGAAGAAACCTCAACATCTCGCCCGCGGTTTTTCGTGCTGATGCTGGCGGGTCGGGTCAAACCATGGTTGACTCCGGATCCGAGTTTACTTACCTTGTTAATGCCGCTTACGATAAGGTGCGGGATGAGGTAGTTAGAGTTGTGGGGCCCAGGTTGAAGAAGGATTACGTGTACGGTGGTGTTGCGGACATGTGTTTTGACGGGAATGCGGTTGAGATCGGACGGCTGATAGGGGACATGGTGTTTGAGTTCGAGAAGGGCGTGGAAATACTGATTCCCAAGGAGAGGGTTCTGGCTACAGTGGAGGGTGGGGTCCACTGCGTTGGGATTGCGAACTCTGATAAATTGGGTGCGGCCAGTAACATTATTGGGAATTTTCATCAGCAAAATCTGTGGGTGGAGTTTGATCTGGTTAATCGCAGAGTGGGTTTCGGTACGGCTGATTGTAGCAGATTGGCTAAGTAG 1332 0.5165 MFSNMHLLFFFLLTSIHLSAQLNHNSTSFSLSFPLTSLPLSTNTTSKMLRNSLLIANTNHSRLTSPPSSPYNYKLSLKYSMALIVNLPIGTPPQVQPMVLDTGSQLSWIQCHNKAPAKPPPTASFDPSLSSTFSILPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKITKFSYCVPTRETRPGYTPTGSFYLGNNPNSNTFRYIEMLTFAQSQRMPNLDPLAYSVALQGIRIGGRNLNISPAVFRADAGGSGQTMVDSGSEFTYLVNAAYDKVRDEVVRVVGPRLKKDYVYGGVADMCFDGNAVEIGRLIGDMVFEFEKGVEILIPKERVLATVEGGVHCVGIANSDKLGAASNIIGNFHQQNLWVEFDLVNRRVGFGTADCSRLAK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00110 443 Gene3D Acid Proteases 247 443 IPR021109 -
Pumo1g00110 443 Gene3D Acid Proteases 61 245 IPR021109 -
Pumo1g00110 443 Pfam Xylanase inhibitor N-terminal 84 239 IPR032861 -
Pumo1g00110 443 Pfam Xylanase inhibitor C-terminal 278 434 IPR032799 -
Pumo1g00110 443 ProSiteProfiles Peptidase family A1 domain profile. 83 434 IPR033121 -
Pumo1g00110 443 FunFam aspartic proteinase PCS1 249 442 - -
Pumo1g00110 443 PANTHER OS07G0603500 PROTEIN-RELATED 42 438 - -
Pumo1g00110 443 FunFam Aspartyl protease family protein 62 245 - -
Pumo1g00110 443 CDD pepsin_A_like_plant 84 438 IPR034161 -
Pumo1g00110 443 SUPERFAMILY Acid proteases 84 441 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00110 Pumo-Chr1 1927101 1929282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00110 85 443 Miscellaneous Gene Families AT1G44130 23.134 5.27e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00110 - - gmx:100803089 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00110 1 1927101 1929282 Pumo1g00110 1 1927101 1929282 ECH