Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02320 ATGCCCCACTTTGTAAATTTTCGGCTTTTCTCACGCTTCCACACACTCAAAACCCTTCCTTTCTCCACCCACCAAATGGGCATGGTTGATACCCTCTGTACCCATCTCCACCAAAGCAATGGTAGTGTTGAGAATTCATTGTCTAAGGTTAAGCCTAAACTCGATTCTCAATGTGTCATCCAAGTCCTCAACACCTGCTGTCCCAAGCAACCTCAATTGGGTGTCAGGTTTTTCGTTTGGGCAGGATTTCAATCTGGTTACAGGCACAGTGCTTACATGTACAGCAAAGCTTGCAACTTGCTTGGAATTGATCACAATCCCCAAATTATTCGTGATGTGGTTGAGTCTTATGAGGCTGAAGGCTGTTTAGTCACTGTCAACATGTTTAGGGAGGTGCTGAAGCTGTGTAAAGAAGCTCAGCTTGCTGATATGGCTTTGTGGGTCTTGAGGAAGATGGAGGAGACTTTCAACCTCCATGCTGACACTGTCATGTATAACATCGTTATAAGGTTGTGTTGCAAGAAGGGTGACATTGGAACGGCTGAGAAGTTGACCAGGGAGATGAGTTCAAATGGTCTTTGTCCTGATCTTATTACGTATATGGCAATAGTTGAGGGATTCTGCAATGCGGGTCGATCTGAGGATGCTTACTCTGTGCTTCAGGTTATGAGAGTACATGGATGTTCACCCAATTTGGTGATTTTATCGGCCATTTTAGACGGCTTCTGTAGGTCTGGCTCCATGGAAAGGGCACTGGAGTTGTTGGATGAAATGGAGAAAGATGGGGATTGTAGTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGCCAGTGGACGAAAGCATTGGATACTTTGGATAGAATGAAAGCTTTTGGGTGCCATGCAAATCATGTTACTGTTTTTACTTTGGTTGAAAGTCTTTGTGCCGAGGGTCATGTGGATGAAGCTTATGGGTTAATTGATAAATTTGTGGTGGAACATGGTGTTTCGTATGGTGATTTCTACAGTTCACTTGTGATTTCTTTGATAAGGATTAAAAAGCTGGAGGAAGCAGAGAAGCTCTTCAAGGAAATGCTTGCTAGTGATGTCAAATTGGGTACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTCTGTATGAAGGACCGGATATTGGATGGATTCTACTTGCTTGAAGCAATTGAGAATAAGGGATGTTTGTCTTCCATTGACTCTGATATTTATTCTATTCTTTTAATTGGGCTTTGTCAAAGAAGCCACCTGAAGGAGGCCACAAAGCTGGCCAAGATAATGCTTAAGAAATCAGTTCTGCTACAACCTCCACACAAAGATGGTGCAATTGATATCTTAATAAAATCTGGAGAAAAAGATCTTGTAAACCAGTTGACTGGCATACATAAGGGACTTTGA 1425 0.4225 MPHFVNFRLFSRFHTLKTLPFSTHQMGMVDTLCTHLHQSNGSVENSLSKVKPKLDSQCVIQVLNTCCPKQPQLGVRFFVWAGFQSGYRHSAYMYSKACNLLGIDHNPQIIRDVVESYEAEGCLVTVNMFREVLKLCKEAQLADMALWVLRKMEETFNLHADTVMYNIVIRLCCKKGDIGTAEKLTREMSSNGLCPDLITYMAIVEGFCNAGRSEDAYSVLQVMRVHGCSPNLVILSAILDGFCRSGSMERALELLDEMEKDGDCSPNVVTYTSVIQSFCKRGQWTKALDTLDRMKAFGCHANHVTVFTLVESLCAEGHVDEAYGLIDKFVVEHGVSYGDFYSSLVISLIRIKKLEEAEKLFKEMLASDVKLGTLASSLLLKELCMKDRILDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRSHLKEATKLAKIMLKKSVLLQPPHKDGAIDILIKSGEKDLVNQLTGIHKGL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02320 474 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Pumo11g02320 474 NCBIfam pentatricopeptide repeat 341 371 IPR002885 -
Pumo11g02320 474 NCBIfam pentatricopeptide repeat 198 231 IPR002885 -
Pumo11g02320 474 NCBIfam pentatricopeptide repeat 163 196 IPR002885 -
Pumo11g02320 474 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Pumo11g02320 474 Gene3D Tetratricopeptide repeat domain 336 472 IPR011990 GO:0005515
Pumo11g02320 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pumo11g02320 474 Pfam PPR repeat 412 440 IPR002885 -
Pumo11g02320 474 Pfam PPR repeat 341 367 IPR002885 -
Pumo11g02320 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Pumo11g02320 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Pumo11g02320 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Pumo11g02320 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pumo11g02320 474 Pfam PPR repeat family 161 209 IPR002885 -
Pumo11g02320 474 Pfam PPR repeat family 230 280 IPR002885 -
Pumo11g02320 474 Gene3D Tetratricopeptide repeat domain 260 331 IPR011990 GO:0005515
Pumo11g02320 474 Gene3D Tetratricopeptide repeat domain 190 259 IPR011990 GO:0005515
Pumo11g02320 474 Gene3D Tetratricopeptide repeat domain 31 189 IPR011990 GO:0005515
Pumo11g02320 474 SUPERFAMILY TPR-like 268 366 IPR011990 GO:0005515
Pumo11g02320 474 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 47 442 - -
Pumo11g02320 474 Pfam PPR repeat 298 328 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02320 Pumo-Chr11 55885051 55887759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02320 111 445 Glycosyltransferase AT1G05670 25.269 1.31e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02320 - - ccaj:109798432 814.683