Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02313 ATGGCCGAGGAACCCCAAAAACCAGCTTCCGCTGAAGAAGTGGTGCCTGTCCCTGCGGACAAGCCACCAACTACTACCCAAGCTGAAGAAAAGCCAGCAGCAACCACCGATCCTGAAACTGAAGAGAAGCCAACAGCAACCACCGAAGTTGAGGCTAAAGAAGAAAGCATCGAAGAAGTGGTGGCGGAAGCAGAGAAGGCCCAGAGTGGTTCCCAATGGGTTTCGTTCAAGGAGGAGACCAACGTGGTTGGCGACCTCCCCGAAGCGCAGAAGAAAGCCCTTGATGAGCTCAAGAAGCTTGTTCAAGAAGCGCTTAACAACCGTGAGTTAATTGCTCCCAAGCCAGAACCTGCAGAGAAGAAGAAAGCGGACGAAGTGGCAGCAGAAAAGAAGGAACCAGAAGAGAAGAAGGAAGTAGAAGTCGTGACCGAAGAGAAGAAGGAAGTAGAAGCCGTGACCGAAGAGAAGAAGGAGACCGAAGAGAAGAAGGAAGTAGAAGCCGTGACCGAAGAGAAGAAGGAAGTTGAAGTCGTGACCGAAGAGAAGAAGGAAGTTGAAGTCGTGACAGAAGAGAAGAAGGAAGTAGAAGCCGTCACCGAAGAGAAGAAGGAAGTTGAAGTCGTGACCGAAGAGAAGAAGGAAGTTGAAGTCGTGACCGAAGAGAAGAAGGAAGTGGAAGTGACAGAAGAAGAAAAAGGTTCGGAGGCGGAGGGTGAAGAGAAGAAGGTTGCTCCAGAGGAAGTTGAGATATGGGGAATTCCCCTGCTGGCGGACGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGGGCGAGGGATTTCAAGGTGAAGGATGCCTTCAGCATGATCAGAAACACGGTGCGTTGGCGAAAGGAGTTCGGAATCGACGGTCTTGTCGTGGAAGATCTTGGAAGTGATTGGGACAAGGTGGTGTTCACTCATGGATACGACAAACAGGGTCACCCTGTGTGCTACAACGTGTTTGGTGAGTTTGAGGACAAGGAGTTGTACAACAAGACCTTTTCCGACGAGGAGAAGCGCAACAAGTTCATAAGGTGGAGGATTCAGTCTTTGGAGAAGAGTGTGAGAAGCCTTGATTTCTCTCCCACTGCTATCTCCACAATAGTCCAGGTCAACGACCTTAAAAACTCTCCTGGACTCACCAAGAGGGAACTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTAGCCAAGCAGATATTTATCAATGTTCCGTGGTGGTACCTTGCCTTTTATAGGATGATCAGTCCCTTCTTCACTCAGAGGACCAAGAGCAAATTTGTATTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTACAAATATATAGCTCCCGAGCTGGTGCCAGTTCAATATGGTGGACTGAGCAGAGAGGGTGAACAAGAATTCACCACTGCGGATCCTGTTACGGAGGTTACAATTAAACCCGCAACTAAACATGCTGTTGAGTTCCCAGTTTCTGAGAAAAGCCATATAGTTTGGGAAATCCGAGTGGTGGGGTGGGATGTGAACTATGGAGCTGAATTTGTGCCGAGTGCTGAGGATGGATACACTGTCATAGTACAGAAGAGCAGGAAAATTGGTCCCGCTGACGAGATCGTAATTACGAACGGTTTCAAAATTGGTGAAGCTGGCAAGATTGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTGCTCTACAGGTCCAAGACCAAACCCATCGCAGAGTAA 1764 0.4864 MAEEPQKPASAEEVVPVPADKPPTTTQAEEKPAATTDPETEEKPTATTEVEAKEESIEEVVAEAEKAQSGSQWVSFKEETNVVGDLPEAQKKALDELKKLVQEALNNRELIAPKPEPAEKKKADEVAAEKKEPEEKKEVEVVTEEKKEVEAVTEEKKETEEKKEVEAVTEEKKEVEVVTEEKKEVEVVTEEKKEVEAVTEEKKEVEVVTEEKKEVEVVTEEKKEVEVTEEEKGSEAEGEEKKVAPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFSMIRNTVRWRKEFGIDGLVVEDLGSDWDKVVFTHGYDKQGHPVCYNVFGEFEDKELYNKTFSDEEKRNKFIRWRIQSLEKSVRSLDFSPTAISTIVQVNDLKNSPGLTKRELRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFYRMISPFFTQRTKSKFVFAGPSKSAETLYKYIAPELVPVQYGGLSREGEQEFTTADPVTEVTIKPATKHAVEFPVSEKSHIVWEIRVVGWDVNYGAEFVPSAEDGYTVIVQKSRKIGPADEIVITNGFKIGEAGKIVLTIDNQTSKKKKLLYRSKTKPIAE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02313 587 SMART sec14_4 304 472 IPR001251 -
Pumo11g02313 587 PANTHER PATELLIN-1 150 584 IPR044834 GO:0008289
Pumo11g02313 587 Pfam CRAL/TRIO domain 309 469 IPR001251 -
Pumo11g02313 587 MobiDBLite consensus disorder prediction 113 173 - -
Pumo11g02313 587 SUPERFAMILY CRAL/TRIO domain 310 471 IPR036865 -
Pumo11g02313 587 ProSiteProfiles GOLD domain profile. 451 582 IPR009038 -
Pumo11g02313 587 MobiDBLite consensus disorder prediction 108 173 - -
Pumo11g02313 587 PRINTS Cellular retinaldehyde-binding protein signature 264 286 - -
Pumo11g02313 587 PRINTS Cellular retinaldehyde-binding protein signature 427 446 - -
Pumo11g02313 587 CDD SEC14 306 470 IPR001251 -
Pumo11g02313 587 Gene3D - 190 499 IPR036865 -
Pumo11g02313 587 SMART CRAL_TRIO_N_2 261 286 IPR011074 -
Pumo11g02313 587 MobiDBLite consensus disorder prediction 224 243 - -
Pumo11g02313 587 FunFam SEC14 cytosolic factor family protein 304 486 - -
Pumo11g02313 587 MobiDBLite consensus disorder prediction 34 62 - -
Pumo11g02313 587 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 484 579 IPR036598 -
Pumo11g02313 587 Coils Coil 142 162 - -
Pumo11g02313 587 SUPERFAMILY CRAL/TRIO N-terminal domain 81 301 IPR036273 -
Pumo11g02313 587 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 314 475 IPR001251 -
Pumo11g02313 587 Coils Coil 178 228 - -
Pumo11g02313 587 Coils Coil 50 70 - -
Pumo11g02313 587 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02313 Pumo-Chr11 55739211 55741691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02313 265 449 Acyl Lipid Metabolism Gene Families AT1G55840 28.713 1.70e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02313 K19996 - gmx:100806382 632.869