Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02312 ATGGCCGAAAATGATTCAAACCCTACTCCAGCCGCTACACCACCGCCACAGGAACCCGATGTAGCTGCGGAACCCATCACTGAGTCTGAGACCAAAGACCTACCTCCTCCTCCGCCGCCATCGGATGTGGTTGTGGTTGAAGACAAGGTGAAAGCTGAGGAGGCGGTCGCGGTTGAAGACATTCACAAAGAAGAAGTAAAAGCTGAGGTGGCGGTTGTAGTTCAAGAGAAAGAGAAAGAAGAGGAAGAGGAGCGTAAGATTGTTCCAGAGAGCGAGTCAGAGTCATTGTCATTGAAGGAGGAGAGCAATAGGGTTTCTGATTGGGAGAGAAATGCCATTGATGAGCTGAAGAAGGTCCTGAAAGAGGAATTGAAAGCAGGCGAGGAGGAGGAGGAGGTTTGGATCTGGGGCGTCCCTCTCTTGAAGGATGAGAGGACTGACGTGATTCTGCTCAAGTTTCTGAGAGCCCGCGAGTTGAAAGTGAAGGACGCTCTTGTGATGATTCAAAACACCCTCCGATGGAGGAAGGACTTCAACATCGACGCCCTTCTGGAGGAAGATCTGGGCGATGAGTTGGAGAAGGTGGTGTTCATGCACGGACACGGCAGAGAGGGCCATCCCGTCTGTTACAACGTCTATGGAGAGTTCCAGAACAAGGACCTCTATCACAAGGCCTTCTCCACTGAGGAAAACCGAACCAAGTTCCTCCGATGGCGGATTCAGTTGTTGGAGCGCAGTATTAGGAACCTCGACTTCACTCCTGCCGGCGTCAACACCATTTTCCAAGTCAATGACCTCAAAAACTCTCCTGGCCCTGCCAAACGGGACCTCCGCCTTGCCACAAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCGTGGTGGTATCTTGCTTTCTATACCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAGCAAATTTGTCTTTGCTGGACCATCCAAGTCTCCCGATACTCTTTTCAAGTATATTTCTCCCGAGCAAGTCCCCGTTCAGTATGGTGGCCTCAGTGTAGATTTCTGTGACTGCAACCCCGATTTCACTATGTCTGATCCTGTCACCGAAATTCCTATAAAGCCAACCACTAAACAAACTGTCGAAATCGCTATTTATGAGAAATGCATTATTGTTTGGGAGCTGCGTGTGGTAGGCTGGGAGGTTAGCTACAATGCTGAATTCAAGCCCGATGCTAAAGATGCATATACAGTTATCGTACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCTGTGGTTTCCAATAGCTTTAAAGTTGGTGAACTGGGAAAATTGTTGCTCACCATAGACAATCCTACCTTGAAAAAAAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTGTGATTGA 1428 0.4839 MAENDSNPTPAATPPPQEPDVAAEPITESETKDLPPPPPPSDVVVVEDKVKAEEAVAVEDIHKEEVKAEVAVVVQEKEKEEEEERKIVPESESESLSLKEESNRVSDWERNAIDELKKVLKEELKAGEEEEEVWIWGVPLLKDERTDVILLKFLRARELKVKDALVMIQNTLRWRKDFNIDALLEEDLGDELEKVVFMHGHGREGHPVCYNVYGEFQNKDLYHKAFSTEENRTKFLRWRIQLLERSIRNLDFTPAGVNTIFQVNDLKNSPGPAKRDLRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDAKDAYTVIVQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYRFKIKPYCD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02312 475 Coils Coil 110 133 - -
Pumo11g02312 475 ProSiteProfiles GOLD domain profile. 365 470 IPR009038 -
Pumo11g02312 475 PANTHER PATELLIN-1 62 472 IPR044834 GO:0008289
Pumo11g02312 475 Pfam CRAL/TRIO domain 194 354 IPR001251 -
Pumo11g02312 475 SMART CRAL_TRIO_N_2 146 171 IPR011074 -
Pumo11g02312 475 SUPERFAMILY CRAL/TRIO domain 195 364 IPR036865 -
Pumo11g02312 475 CDD SEC14 191 355 IPR001251 -
Pumo11g02312 475 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 185 354 IPR001251 -
Pumo11g02312 475 Gene3D - 98 390 IPR036865 -
Pumo11g02312 475 MobiDBLite consensus disorder prediction 1 43 - -
Pumo11g02312 475 Coils Coil 63 83 - -
Pumo11g02312 475 FunFam SEC14 cytosolic factor family protein 190 370 - -
Pumo11g02312 475 SMART sec14_4 190 357 IPR001251 -
Pumo11g02312 475 Pfam CRAL/TRIO, N-terminal domain 112 170 IPR011074 -
Pumo11g02312 475 SUPERFAMILY CRAL/TRIO N-terminal domain 99 187 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02312 Pumo-Chr11 55715593 55718025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02312 150 349 Acyl Lipid Metabolism Gene Families AT5G47730 26.291 8.87e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02312 - - gmx:100804006 703.745