Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02280 ATGATAGGCACGACGCTAGTAAGGTTCCGACCAAATTGCATGAGCTTGTCTTCCCACTCCCAGAAGAAGAATAAGAAGAAAAACAGCAACGAAAATAAAACTTGGAAACAGAGACGGTTGGAAAGCCAAGAAAGAAGAAACGCTCTTTCCTTCCCAAAACCCAAATCAACCCCACTCCTTATCCATCACCGACCTCATCCCAAAACAAAATTGGAAGCACTTGAACAAGTCGTCAAAGACCTTGAAGCCTCTGTTGAGAAGGGCATCAAAATTGACCCTCAAATCTATGCCTCTCTCTTAGAAACCTGCTACCGCTTCCAAGCCATTCGTCACGGTATCCGAGTCCATCGCCTTATCCCAACATCCCTGTTGCATAAAAATCTCGGCATTTCCTCCAAGCTTCTTAGGTTGTATGCTTCGTGTGGCTATGTGGATGATGCCCATGACCTGTTTGATCAAATGGCTAAGAGGAATACATCTGCATTTCCTTGGAATTCACTCATCTCAGGATATGCCCAAGTGGGTCTCTATGATGATGCCATTGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTCAACCTGACTTGTTCACCTTCCCTAGGGTTCTCAAAGTTTGTGCCGGAATTGGGTCTGTTCAAGTGGGGGAAGAGATGCATCGCCATGCAGTTCGTGCTGGCTTTTCCACTGATGGGTTTGTCCTCAATGCACTTGTTGACATGTATTCTAAGTGCGGCGACATTGTAAAGGCTCGAAAGGTCTTTGATAAGATGCCTCACAGAGACCCCGTGTCGTGGAATTCAATGCTCACAGCTTATGTTCATCATGGCCTCGAGGTTGAGGCAATGAACATTTTCCGCCAAATGATTTTAGAAGGGTGTGAACCTGACTCTGTTAGCATATCCACCGTTCTTACAGGGGTGTCATCCCTAGGTCTAGGGGTTCAAATTCATGGATGGGTAATCCGGAAAGGACATGAATGGAACTTGTCCATTGCTAATTCCTTGATCATGATGTACTCCAATCATGGTAGGTTGGAAAAGGCACGTTGGATATTCAATCTAATGCCAGAGAGGGATGTTGTTTCGTGGAATTCTATAATATCTGCGCATTGCAAACGCCGAGAAGCCCTTGCTTTTTTCGAGCAAATGGAGGAAGCTGGTGTTCAGCCTGATAAAATAACGTTCGTTTCAATATTATCAGCTTGTGCCTACTTAGGTTTGTTGAAGGATGGAGAGAGATTGTTTGCTCTAATGTGTGGAAAATATAAAATAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCAGGACTGATTAAAAAGGCTTATAGCATCATAGTCGACGGAATGGGCTCTGAGGCTGCTGGTCCAACTCTGTGGGGAGCTTTATTGTACGCCTGCTTTATGCACGGAGACGCAACAATAGGGGAGATTGCTGCAATCAGGCTTTTTGATTTAGAGCCAGACAATGAACATAATTTTGTACTTCTTATGAGGATCTATGAAAATGCAGGCAGATTAGAGGACATGGAGAGGGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 1590 0.4409 MIGTTLVRFRPNCMSLSSHSQKKNKKKNSNENKTWKQRRLESQERRNALSFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIKIDPQIYASLLETCYRFQAIRHGIRVHRLIPTSLLHKNLGISSKLLRLYASCGYVDDAHDLFDQMAKRNTSAFPWNSLISGYAQVGLYDDAIALYFQMVEEGVQPDLFTFPRVLKVCAGIGSVQVGEEMHRHAVRAGFSTDGFVLNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVEAMNIFRQMILEGCEPDSVSISTVLTGVSSLGLGVQIHGWVIRKGHEWNLSIANSLIMMYSNHGRLEKARWIFNLMPERDVVSWNSIISAHCKRREALAFFEQMEEAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGMGSEAAGPTLWGALLYACFMHGDATIGEIAAIRLFDLEPDNEHNFVLLMRIYENAGRLEDMERVRMMLVDRGLDY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02280 529 NCBIfam pentatricopeptide repeat 164 195 IPR002885 -
Pumo11g02280 529 NCBIfam pentatricopeptide repeat 233 259 IPR002885 -
Pumo11g02280 529 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Pumo11g02280 529 NCBIfam pentatricopeptide repeat 361 391 IPR002885 -
Pumo11g02280 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 260 IPR002885 -
Pumo11g02280 529 Pfam E motif 475 522 IPR046848 -
Pumo11g02280 529 FunFam pentatricopeptide repeat-containing protein At2g33680 332 529 - -
Pumo11g02280 529 SUPERFAMILY TPR-like 100 288 IPR011990 GO:0005515
Pumo11g02280 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Pumo11g02280 529 Pfam PPR repeat 134 158 IPR002885 -
Pumo11g02280 529 Pfam PPR repeat 234 259 IPR002885 -
Pumo11g02280 529 Pfam PPR repeat 430 450 IPR002885 -
Pumo11g02280 529 Gene3D Tetratricopeptide repeat domain 212 310 IPR011990 GO:0005515
Pumo11g02280 529 Gene3D Tetratricopeptide repeat domain 311 407 IPR011990 GO:0005515
Pumo11g02280 529 Gene3D Tetratricopeptide repeat domain 408 528 IPR011990 GO:0005515
Pumo11g02280 529 Gene3D Tetratricopeptide repeat domain 66 211 IPR011990 GO:0005515
Pumo11g02280 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 260 527 IPR046960 GO:0003723|GO:0009451
Pumo11g02280 529 MobiDBLite consensus disorder prediction 24 48 - -
Pumo11g02280 529 Pfam PPR repeat family 261 307 IPR002885 -
Pumo11g02280 529 Pfam PPR repeat family 164 206 IPR002885 -
Pumo11g02280 529 Pfam PPR repeat family 358 403 IPR002885 -
Pumo11g02280 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Pumo11g02280 529 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 214 313 - -
Pumo11g02280 529 FunFam Pentatricopeptide repeat-containing protein At4g25270, chloroplastic 69 213 - -
Pumo11g02280 529 MobiDBLite consensus disorder prediction 13 62 - -
Pumo11g02280 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02280 Pumo-Chr11 55392150 55394180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02280 85 527 Glycoside Hydrolase AT3G49170 31.938 2.04e-72 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02280 - - gmx:112997711 986.482