Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02273 ATGGGGCGTTTGTGCAAATGTACCATATTCATATCGAGTGTAACGGGTTTGAAGCATAATTATGGAGAAGCTTTGTCAAAGAGCATATTGTTCTTTGAAGGACAGAGGTCAGGGAAGTTGCCACCAACACACAGGATGACTTGGAGGAAGGACTCTGCGCTTCAAGATGTCTATACTACAGACTTCCCTTTCCTTCCTAAAGTTGACTTGGTTGGTGGCTACTACGATGCTGGTGACAACGTGAAATTCAACTTTCCTATGGCATTTTCAACAACCATGCTGGCCTGGAGTGTAATAGAGTTCGGAAAATTCATGGGTCCAGACCTTAAACATGCGTTAGACGCTATCCGTTGGGCCACAGACTATTTCCTCAAAGCCACAAGCATCCCCGGTTTTGTGTTTGCACAAGTTGGTGACCCATATGCTGATCACAATTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTTTGCTGTTAGCAGGGACTACCCTGGCTCTGAAGTTTCAGCTGAGATAGCAGCAGCACTTGCAGCCTCTTCAATTGTATATAGCAAGTTTCATATAGCTTATTCTACAAGACTTCTCCAAAGGGCTATCAAGGTTTTTGACTTTGCAGATAAGTACAGGGGATCATACAATGACAGTCTCGGACCCTGGGTGTGCCCATTCTATTGTGATTTTAGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTCAAGGCTACTAAACGCCCTTACTACTTAGATTACATTGACAAAAACATTCATAATCTGAAAAACTATGCTGAATTTGGATGGGACTCGAAGGACGCTGGCATCAACGTGCTCGTTTCTAAGCTTCTAATTAATAGTAGCTCTAATTCTAAGCCTTTCATTCTCAATAATGCGGACAAGTTTGTCTGTTCTGTGCTACCTGAATCACCTTCAGTATCAGTCTCATACTCTCCAGGTGGGCTTCTATTCAAGCCTGGGGGGAGTAACTTGCAGCATGCAACAGCAATCTCATTTCTGTTTCTGGTTTATGCTGGCTATTTGAAAAAGGCAAATAAAGAGATTGACTGTGGCGGTAGAGTTTTTGCTTCTCCAAAGCGACTTAAACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCAGTGAATATGTCATACATGGTAGGATACGGAGCAAAATTTCCTGAAAGAATACATCATCGTGCGTCTTCATTGCCATCCGTAGATGTGCACCCTGGCCACATTGGTTGCAAAGGAGGATCATTTTATTTTGACAGCCAAAATCCAAACCCCAACTTGCTTGTAGGAGCTGTTGTGGGGGGACCTGATATGAAGGATTCATACGCAGATTCTCGAGCAGATTTTCTACACTCTGAACCTACAACATACATCAATGCACCCCTTGTCGGTGTTTTGGCCTACTTCAATTCACATCCATCCTAA 1461 0.4408 MGRLCKCTIFISSVTGLKHNYGEALSKSILFFEGQRSGKLPPTHRMTWRKDSALQDVYTTDFPFLPKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWATDYFLKATSIPGFVFAQVGDPYADHNCWERPEDMDTPRTAFAVSRDYPGSEVSAEIAAALAASSIVYSKFHIAYSTRLLQRAIKVFDFADKYRGSYNDSLGPWVCPFYCDFSGYQDELVWGAAWLFKATKRPYYLDYIDKNIHNLKNYAEFGWDSKDAGINVLVSKLLINSSSNSKPFILNNADKFVCSVLPESPSVSVSYSPGGLLFKPGGSNLQHATAISFLFLVYAGYLKKANKEIDCGGRVFASPKRLKQIARGQVDYILGSNPVNMSYMVGYGAKFPERIHHRASSLPSVDVHPGHIGCKGGSFYFDSQNPNPNLLVGAVVGGPDMKDSYADSRADFLHSEPTTYINAPLVGVLAYFNSHPS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02273 486 Gene3D - 16 486 IPR012341 GO:0005975
Pumo11g02273 486 FunFam Endoglucanase 17 486 - -
Pumo11g02273 486 Pfam Glycosyl hydrolase family 9 21 478 IPR001701 GO:0004553|GO:0005975
Pumo11g02273 486 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 454 472 IPR033126 -
Pumo11g02273 486 PANTHER ENDO-1,4-BETA-GLUCANASE 13 483 - -
Pumo11g02273 486 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 381 407 IPR018221 -
Pumo11g02273 486 SUPERFAMILY Six-hairpin glycosidases 19 484 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02273 Pumo-Chr11 55311243 55314634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02273 4 486 Glycoside Hydrolase AT1G70710 60.082 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02273 K01179 - gmx:100775752 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02273 11 55311243 55314634 Pumo11g02273 11 55311243 55314634 ECH