Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02254 ATGTCGTTTCCGTCGGAGAACGATAACCCTAACCCTAACCCTACTCCATTGAAGAAACGATGGTCAGACATATGGACGAAATCGAAACCCCTAAACCAAATGGTAATGGCGATGAAGCTTCACTCCCTCTCTTCTTCTCCTCGCATCACCACTGAGAAAACCAACCCTATTCTCTCCCCATTCCCTATGAGCAATCGAACCGTTCTCTTATCCGACGAGCTTCTCCTGAAAATCCTTACATTAGTCTCCGATTCGTCCACTCAGCGAAACTCGAACTCTCTGGTGTGCAAGCGGTGGCTGAACCTCCAAGGGCGCCTCGTCCGCTCCCTCAGAATCTCCGACTGGAACTTCCTCCTCTCCGGCAGACTCATCCACCGCTTCCCCAATCTCAACCACGTCGATTTGCTCCCCGCCGCCTTAATCTCCCCCAAAAATTCCGGCATTCTCTTAAGCAACCGCGTCATATCCATGCACCTCGATTCGAACTCCTCCCCTAATTGGTGCTTCTGCGAGGACAACATGCTCCCCGTCGAAGTCATCGATAACGGCCTCACCTCCCTCGCCGGCGGCTGCCCCAATTTGCGCCACCTCCACGTCATCGGCGCCACCGAGATGGGGCTGCTCAGCGTCGCCGAGGAGTGCTCCACTTTGCAGGAACTCGAACTGCAGCGCTGCAGCGACAATGTTCTGCGCGGGATCGCCGCGTGTGGGAATCTGCAGATTCTGAAACTCGTTGGGCACGTTGATGGGTTCTACAATTCGGTGGTGTCTGATATTGGGTTGACTATTCTGGCTCAGGGGTGTAAGAGGCTCGTGAAGTTGGAGCTTAGTGGGTGTGAAGGGAGCTTTGATGGGATTAAGGCCATTGGGAAGTGTTGCCAAATGTTGGAGGAGTTTACCTTCTCTGATCATAGGATGGATGATGGCTGGCTTGCTGCTATCTCCTTTTGTGAGAATTTGAAGACTTTGAGGTTACAGTCTTGTAAGAGGATTGATCCCAATCCGGGCATCGAGGAGTATTTGGGTTGTTGCCCTGCGCTTCAACGGTTGCATTTGCAGAGATGTCAATTGAGGGATAAGAAGAGTGTTGCGGCTTTGTTTTCTGTCTGCAGGGCTGTCAGGGAGATTGTTATTCAAGACTGCTGGGGCTTGGATAATAGCATGTTCAGTTTTGCAATCATTTGCAGGAGGGTAAAGTTGTTATACTTAGAAGGGTGCTCGTTGCTAACAACAGAAGGTTTGGAGTCTGTAATTCATTCGTGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCGTGTAAGAATATAAAGGACAATGAGATCTCTCCTGCGCTCGCAACCTTGTTTACCACTCTCAAGGAGTTGAGATGGAGCCCAGATACCAAATCTCTTCTTCCATCCAGTGTTATGGGGATAACCATGGGAAAGAAAGGTGGTAAATTTTTCAAAAGGGCACGATAA 1458 0.5021 MSFPSENDNPNPNPTPLKKRWSDIWTKSKPLNQMVMAMKLHSLSSSPRITTEKTNPILSPFPMSNRTVLLSDELLLKILTLVSDSSTQRNSNSLVCKRWLNLQGRLVRSLRISDWNFLLSGRLIHRFPNLNHVDLLPAALISPKNSGILLSNRVISMHLDSNSSPNWCFCEDNMLPVEVIDNGLTSLAGGCPNLRHLHVIGATEMGLLSVAEECSTLQELELQRCSDNVLRGIAACGNLQILKLVGHVDGFYNSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGKCCQMLEEFTFSDHRMDDGWLAAISFCENLKTLRLQSCKRIDPNPGIEEYLGCCPALQRLHLQRCQLRDKKSVAALFSVCRAVREIVIQDCWGLDNSMFSFAIICRRVKLLYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDNEISPALATLFTTLKELRWSPDTKSLLPSSVMGITMGKKGGKFFKRAR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02254 485 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g02254 485 SUPERFAMILY RNI-like 92 246 - -
Pumo11g02254 485 PANTHER UNCHARACTERIZED 69 442 - -
Pumo11g02254 485 MobiDBLite consensus disorder prediction 1 16 - -
Pumo11g02254 485 FunFam F-box protein At5g51380 63 332 - -
Pumo11g02254 485 SMART LRR_CC_2 268 292 IPR006553 -
Pumo11g02254 485 SMART LRR_CC_2 236 267 IPR006553 -
Pumo11g02254 485 SMART LRR_CC_2 344 369 IPR006553 -
Pumo11g02254 485 SMART LRR_CC_2 317 343 IPR006553 -
Pumo11g02254 485 SMART LRR_CC_2 191 216 IPR006553 -
Pumo11g02254 485 SMART LRR_CC_2 395 420 IPR006553 -
Pumo11g02254 485 FunFam F-box protein 333 467 - -
Pumo11g02254 485 CDD F-box_AtTIR1-like 69 105 - -
Pumo11g02254 485 Gene3D Ribonuclease Inhibitor 65 284 IPR032675 -
Pumo11g02254 485 Gene3D Ribonuclease Inhibitor 285 472 IPR032675 -
Pumo11g02254 485 SUPERFAMILY RNI-like 252 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02254 Pumo-Chr11 55108433 55110827 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02254 K10268 - gmx:100812193 882.478