Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02240 ATGGGATTTGATAATGAGTGCATAGTGAACATTCAATCTCTTGCTGGAGAGTACTTCTGTCCTGTCTGTCGGCTGCTCGTATTTCCAAATGAAGCTTTGCAATCACAATGTACTCATTTATATTGCAAGCCATGTTTAACGTACATTGTGAGCACTACAAGGGCTTGCCCATATGATGGTTACTTGGTCACCGAGGCAGATTCCAAGCCTCTGACAGAGTCAAATAAGCCACTTGCTGAAACTATTGGAAAAATAGCAGTTCATTGCCTTTATCATAGGAGCGGATGCACATGGCAAGGAACTTTGTCTGAGTGCACATCTCATTGTTCTGGATGTGCTTTTGGCAATTCTCCTGTTGTTTGCAACAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAACATGCACAAAATTGCCCTGGTGTGCAAGGTCAGGTACAGCAGGTGGCCATTACCCAGGATCCTTCAGCTACTAGTGCCGTCACTTCTACGGATCAGAATCAGAATGCTGCTCCAGTTGCAGCAACGGCTTCACAAGCTCTTACATCTCAAACTGCTGTCACAACTACTATGCCTGGGCAGGTTTCAAATCAGATACCCAACCCAGCTTCCCAAACCCAAGCTTTAGTTCAAACTGCTGGGCAGCCAACAGCAGAGCAATGGTATCAGCAGCAACAATATCAACAATACTACCAGCAATACCCTGGACAAGATCCATACCAACAGCAGTATCAACATTACTACCCCTATCAACAGTCTATGGTTCCACAGTACCAGCAGGCCTATGGTCAGCCGCAACCTCAGTCTCAATCACAGCCCCAGGCCCAGCTTCAACCTCAGCCCCAGCCACAGGCCCAACACCAATCTCAGCCTCAACTTCAACCACAACCTCAGGCACAAGGACTGTCTCATCCACCCACCCATATTCAGGCTCCTGTGGCGCCACCATCTCAGAATCAGATGCAAGTTCAACAACCACCACAACAACTTCAACCTGCTGTGCAGCCACATGGTCAGACGAGTCATGCACCAGGCCATGGTCAAGCCCTCCCCCAGTCTCAGACTCAGCCTTATCCTTATCCCCAAGTTCAGCCTCATTCTGTCCAACCTCAACCCCAACAACCTATGCAAATGCCTCCTTATCAGCAGCCTCATCCTCAAATGCAGCAATCGCAACCACAAATTCAACAACCAGTTCAGAAGTATCCTGTTCCTCAATCTCAAGTTCATGCACAACTGCAACCTAATGCTCCAGTTCAACATCACTCTCAGCTCCCCATGCCTCCTCACCAGCCTATGACTCCTAATGTCCAGCCTCAAGTGCAAAATGCAACGCCACATTCAGTGACTGGGCATCACTCTTATCCCCAACCACCGCCTCACCCGAATATGCAACCAGGAGTCGCTCAACATACTATGCACATGCATCCTCAAAGTGGGCCTCAACCCCAGGCCCAACACCCTGTCCAGATGCAGAATCAGTTTCCTCCACAAATTCCAACGGCACGTCCTAATCAATCTCATGCTATGTTTCCTAACCAGCAACAGCCAGCTTTGTTGCCTTCATCAGTTCAGGGCCAAACTACCCCTCCTTTACAACAGCAGCCAGTATATACCCATAATCAACAACCTGGGCAAATCAACCAACGTCCTACTTTGCAACCTGTTCAACAAATACCTCAGCAGCCATTTGCACAACACCAAATGCCTATGCCATCTCATTTACGACCACAAGGTCCAGCACATTCATTTCCAAAGCATGCATATCTACAATCACAGGGTAATACTGCACTATCAAATAGCATTCAGCACAGTCAATCTCAGAATGCTGCAGGAAGGCCTTTAGTTCCTAATCATGCAGGACACCTACAGCCATTTGCACAATCTGCCAATACCATTCCAGTTAGACCTGGGCAAAATGGTGCTGGCTACCTGCCTGAAAATCAGAAATTGTTGGTTGGGACCAATAATCAAGTACAGTTGCCATCTGAATTGCAGTCTAGGGCACCAGAATTAATTGAAAGACAAGGCGAGGTTGTCGAGCAACAAACTGGCTCTTTCTCTGGGAAACATGGTAAAGTTTTAAAAGGTTTGGACAATGTGTCTGGATCAGCAAATGAGTTGAAATCTGAAAAAGTTGAAGCAGATTTGAAACCAATAGAGGTTGGAAATAAGCAAAATAGTGAAGATCCACACTCTCTGAAGACTTCAGTACCAAATGCCAATGCAGTAGAAAATGGTGATTCTGTGAATAAGAATCTTGGGATCGGGGAGGCTGCTGAAAGCAATTGGAAGCCTTCAAGTGGTAATAAATCAGGTGGTGCAATGCATGGGGTTCAAAATGATAGTAATGAGCATTCTGTCCAAGGCAATGAATTTCAAGATGGACATCCACCGAAGACAGAGACAAAACTCCCCGAGTCAGAAACTGATAAATTGCATAATGATGACAATCCTGCACAATCTGTCTCTCAAAGCAATGGGGGTTTTGCTCAGCTGTCTCACCCAGCCACTTTCACTGATCAGAGTAAGCATCAGCAACAAACAATTAATTATGGGCCTCCTTCTGTCCAGCAGAGATCTTCTGCAATGTTAGCATCACAATTGCCACACCCAACAGTTCCAAATCAGCCGCCCTCTTCAGTGCACTCTTCAATCCTTGTTAGGAATCATGGAGCTGCCCATGTTCTTCATTCAGGACAGCCCTTAACAGAAAATTTTCCGCCAACCATGTTTAAGCCACCACAAGATTCTGACATTCAGTTTAATACTCCAGGGCAAAGCTTTCAACTTCAGTCTCTTGGACCCCCACGACCATTTAACCAAGTCCATGAGCCTCCTTTCCATGCTGGAGCATCTACTTTGTCTCGTCTTGGAGGGCCTCAATTTGGTGCACCACTTCCTGGAGATATGCATGGTCGAATGACGGCCAACTTACCACCACATGCTCCTGAAGGTTTTGGTTTGCAGGATGAAAGGTTCAAACCTTTCCATGTTCCAAATCAACAAAATATTCATAGAAGAGAGTTTGATGATGATCTCAAGAAATTCTCTAGGCTGCCTTTGGATTCCGAGCCAGTTTCTAAATTTGGAAATTATTCATTAGGTGCGCATGAAGCTGGAAAGAGACCGGTTGGTTTTCATGATGATGTCATTAAGAAATCAGGTTCTGCTCTTCATCCTGGTTATCTTGGACCAGGTCCTGGATATGGGAGACATCATATGGATGGTATAGCTCCAAGAAGTCCTGTTAATGAATATGCTGAGATGTCCTCCAGGAGATTGGGGCCCCACTCTGGCAGTCTTGTTGGTAAGTCAGGTATAGATGATTTTGATGGCAGAGTTGCACGTCGTTTTGGTGAATTCCGTGATAGTCGGTTTCCTCATTTGTCTAGCCATTTGCATAGAGATGAATTTGATGGTTTTGGTAACTTTCGAATTGGTGAACATCCGAGGAGTGGTGATTTCATTGGTCAAGATGAATTTGCTGGACATTTTCGGAGGGGTGAACATTTGGGTCCACATAATTTTCCTAGACATTTGCAGCTTGGGGAGCCTATTGGTTTTGGTGCCCACCCTGGTCATATGAGAACAGTTGAACTTGGTGGTTTTCGTAGTTTTGAATCTTTCAGCAAAGGCGGCCGTTCAGGTCATCCACAACTTGGTGAGCCTGGGTTCAGGAGCAGCTTTTCTCTTCCAGGATTTCCTAATGATGCTGGATTTTTAACAGGAGAAATCAGGTCGTTTGATAATTTGAGGAGAAGGAAGGCTTCTAGCATGGGGTGGTGCCGGATATGTAAAGTTGACTGTGAAACAGTAGAAGGTTTGGACTTGCATTCGCAAACAAAGGAGCACCAGAAGATGGCCATGGATATAGTTAAAACAATCAAACAAAATGCGAAGAAACAGAAATTAATACCCAGTGAACAACCCTCAGTTGATGAGGGAAACAAGACACACAAAACTGGTATTGAGGGTCGTGGAAATAAGCATTGA 3999 0.4556 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYIVSTTRACPYDGYLVTEADSKPLTESNKPLAETIGKIAVHCLYHRSGCTWQGTLSECTSHCSGCAFGNSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQVQQVAITQDPSATSAVTSTDQNQNAAPVAATASQALTSQTAVTTTMPGQVSNQIPNPASQTQALVQTAGQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQSMVPQYQQAYGQPQPQSQSQPQAQLQPQPQPQAQHQSQPQLQPQPQAQGLSHPPTHIQAPVAPPSQNQMQVQQPPQQLQPAVQPHGQTSHAPGHGQALPQSQTQPYPYPQVQPHSVQPQPQQPMQMPPYQQPHPQMQQSQPQIQQPVQKYPVPQSQVHAQLQPNAPVQHHSQLPMPPHQPMTPNVQPQVQNATPHSVTGHHSYPQPPPHPNMQPGVAQHTMHMHPQSGPQPQAQHPVQMQNQFPPQIPTARPNQSHAMFPNQQQPALLPSSVQGQTTPPLQQQPVYTHNQQPGQINQRPTLQPVQQIPQQPFAQHQMPMPSHLRPQGPAHSFPKHAYLQSQGNTALSNSIQHSQSQNAAGRPLVPNHAGHLQPFAQSANTIPVRPGQNGAGYLPENQKLLVGTNNQVQLPSELQSRAPELIERQGEVVEQQTGSFSGKHGKVLKGLDNVSGSANELKSEKVEADLKPIEVGNKQNSEDPHSLKTSVPNANAVENGDSVNKNLGIGEAAESNWKPSSGNKSGGAMHGVQNDSNEHSVQGNEFQDGHPPKTETKLPESETDKLHNDDNPAQSVSQSNGGFAQLSHPATFTDQSKHQQQTINYGPPSVQQRSSAMLASQLPHPTVPNQPPSSVHSSILVRNHGAAHVLHSGQPLTENFPPTMFKPPQDSDIQFNTPGQSFQLQSLGPPRPFNQVHEPPFHAGASTLSRLGGPQFGAPLPGDMHGRMTANLPPHAPEGFGLQDERFKPFHVPNQQNIHRREFDDDLKKFSRLPLDSEPVSKFGNYSLGAHEAGKRPVGFHDDVIKKSGSALHPGYLGPGPGYGRHHMDGIAPRSPVNEYAEMSSRRLGPHSGSLVGKSGIDDFDGRVARRFGEFRDSRFPHLSSHLHRDEFDGFGNFRIGEHPRSGDFIGQDEFAGHFRRGEHLGPHNFPRHLQLGEPIGFGAHPGHMRTVELGGFRSFESFSKGGRSGHPQLGEPGFRSSFSLPGFPNDAGFLTGEIRSFDNLRRRKASSMGWCRICKVDCETVEGLDLHSQTKEHQKMAMDIVKTIKQNAKKQKLIPSEQPSVDEGNKTHKTGIEGRGNKH 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02240 1332 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 764 797 - -
Pumo11g02240 1332 SUPERFAMILY TRAF domain-like 84 141 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 364 383 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 564 623 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 260 549 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 476 549 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 710 726 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 798 817 - -
Pumo11g02240 1332 SUPERFAMILY RING/U-box 17 67 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 589 614 - -
Pumo11g02240 1332 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1040 1331 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 818 863 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 437 453 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 314 363 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 384 422 - -
Pumo11g02240 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 118 IPR013083 -
Pumo11g02240 1332 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 1315 1332 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 260 306 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 707 863 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 727 750 - -
Pumo11g02240 1332 MobiDBLite consensus disorder prediction 1301 1332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02240 Pumo-Chr11 54896117 54906146 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02240 - - gmx:100814445 2115.12