Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02239 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCGCGCTAGGGTTTCCGCGAACGCTCCACGCTGCTCCCGACGCTGCCAATGGCTTCGTTCACGACGTTGCGGCTCTTCGCGACTTCCTCGCCGACACGCGCAGGGACGACGCCACCGTCCAGGTCCCCGTCCCCAAGGTTGTGCCGCCGCCTCCGCCACCGCCCGACGGTCTTCCTCTTGGCGCTGACGCGCTCGATGAGTCCGCCTCCATGAAGGCCAAGCGCATCGCGCTCCAGCGCAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGCTTCGAGTCCGGCGATGTCGTGAATACTCCGGGAAATGTTACTGGAGAGGAGCAGGGTCAAGCCAACAGGAGCTATTGTCGAATTTGCAAGTGTGGAGAAAATGAGGGAAGTGAGAAAGCTCAGAAGATGCTATCGTGCAAAAGTTGTGGTAAGAAGTACCATAGGAACTGCTTGAGAAGTTGGGGTCGAAATAGAGATTTGTTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGGATTTGTGAGGCTTGCAGAAGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGCGATGGTGCTTACCACTGTTATTGTCTGCAACCTCCACACAAGAGTGTTTGTAATGGGCCATATTTGTGCACAAAACACGCAAGGTGTCACAGTTGTGGATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTATGGCATATACCAACTGTGATGCATGTGGAAGATTGTTTACGAAAGGGAACTACTGTCCTGTTTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCTATGGTTTGTTGTGATACTTGCCAGCTCTGGGTACATTGCCAGTGTGATAATATCAGTGATGAAAAATATCACCAATTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCTACGTGTCGTGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCTGCCCAAGAGATTTGGAGGAGAAGGAATATTGCTGAGAGAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAAGAAGAGATATTTTCTATTTCACCATTTTCAGATGATGAGGATAGTGGGCCTTTAAAATTAAAGAGTGAATCTGCCCGTTCCTTTAAGTTCTCTCTAAAGAATTTGGCCAATGACTCACCAAAGAAGAAATCGTCAAGCAAAAAGACTGCTAAGAAAAAAGACTCTCAGTCATTTATGACTAGTAAAATTGACACATACAATAGTTTTGAAGGACATAGTGATATTAAATCTTTGCATAGCTTAGATGATGATAAAAATGATGATATACAATCCCAGAGAAATGAAGGTCCAGATGTTTACTCATCACCTGCTACTGGAAGCTTGAGTCAAACCGAAGCATCTTTTCCTATTAATCAGCCAGGGATTTTGAAACATAAGCTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCTAGAGTTGTTCGAATTAAAAGCAACAAGGCACATATTCCGGATAGTGAAGAGGAAAGTGGAAAACACAGCCTTAAGACTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGAGCACGGAAAATTAACGTGGCTAGTTCCCCACGGTCTGATACTTCAAGCTGCCAAAAAGATCAAGATCTGGTGACTGTTAATGGAAATGAAGATATAAGCCAATGGAGGAAGGGAGACAAGTTTGCATTAGATAGACAAGATGACACAGCTAGGCATATTGATGGTAAAGGAAACAGAGTTGATTCTGGGCAATCAAAAATTTTCAAGGTTTCGGGAAGAGAAGGGAATTTGATTAAGCTGGGAAAAGTTAAGCCAGATGTTTCTGAATTGAACCTGACCTCTGGTAGAGGCAATATGTCTGATGGGCGGATAAAACATAGTATTGATGGAATGATTAATCAGGTTGGAATAAAAGCCACATCAAGAGGTGAAAGGACATATTTGGGGAAGCAGTCAGAAGGCAGCTCTGATGCGTATGAGACAGATGACAATAATAATCGTACACCTTCACATTCGTTGCCAAAAGATTCCAAACCTTTACTAAGATTTAAATTCAAGAAACCCAGCATTGAAAGTCAAAATTCTCCTCATCGGGAGGAGGAGAAGATGACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAGGAGAAAACATCATTTAATGAGTCTGAAGGTGTAAGTCAATCACATCAAGACAGTGTAATGGATGGGATCATGGATGCAAATTGGATATTGATGAAATTGGGCAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTTACTGACGTAGTTGAAGGCACTTCAAAGTTATATGTGGCATTAGACGATGGGAAAGTGAAGACCTTGGATCTCAGGAAACAGGGGGTCCGTTTTGTTCCTCAAAAGCAGAAGAGATCAAAGACATGA 2538 0.4425 MAFHVACPITCRRICFCALGFPRTLHAAPDAANGFVHDVAALRDFLADTRRDDATVQVPVPKVVPPPPPPPDGLPLGADALDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVNTPGNVTGEEQGQANRSYCRICKCGENEGSEKAQKMLSCKSCGKKYHRNCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDEKYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNIAERDLIASLRAAAGLPTQEEIFSISPFSDDEDSGPLKLKSESARSFKFSLKNLANDSPKKKSSSKKTAKKKDSQSFMTSKIDTYNSFEGHSDIKSLHSLDDDKNDDIQSQRNEGPDVYSSPATGSLSQTEASFPINQPGILKHKLVDEVMVSDEERKPRVVRIKSNKAHIPDSEEESGKHSLKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLVTVNGNEDISQWRKGDKFALDRQDDTARHIDGKGNRVDSGQSKIFKVSGREGNLIKLGKVKPDVSELNLTSGRGNMSDGRIKHSIDGMINQVGIKATSRGERTYLGKQSEGSSDAYETDDNNNRTPSHSLPKDSKPLLRFKFKKPSIESQNSPHREEEKMTIKGQRSKRKRPSPFKEKTSFNESEGVSQSHQDSVMDGIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDVVEGTSKLYVALDDGKVKTLDLRKQGVRFVPQKQKRSKT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02239 845 SMART ring_2 137 189 IPR001841 -
Pumo11g02239 845 SMART ring_2 275 328 IPR001841 -
Pumo11g02239 845 ProSiteProfiles Zinc finger RING-type profile. 137 190 IPR001841 -
Pumo11g02239 845 SUPERFAMILY FYVE/PHD zinc finger 128 190 IPR011011 -
Pumo11g02239 845 CDD RING-H2 137 190 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 515 538 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 59 79 - -
Pumo11g02239 845 SUPERFAMILY FYVE/PHD zinc finger 271 330 IPR011011 -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 515 534 - -
Pumo11g02239 845 FunFam PHD finger family protein 269 331 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 409 426 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 705 735 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 462 486 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 405 426 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 446 490 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 671 763 - -
Pumo11g02239 845 FunFam PHD finger family protein 131 246 - -
Pumo11g02239 845 ProSiteProfiles Zinc finger PHD-type profile. 272 331 IPR019787 -
Pumo11g02239 845 SMART PHD_3 191 237 IPR001965 -
Pumo11g02239 845 SMART PHD_3 139 190 IPR001965 -
Pumo11g02239 845 SMART PHD_3 274 329 IPR001965 -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 60 75 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 446 461 - -
Pumo11g02239 845 MobiDBLite consensus disorder prediction 673 701 - -
Pumo11g02239 845 ProSitePatterns RecR protein signature. 262 284 IPR015967 GO:0006281|GO:0006310|GO:0046872
Pumo11g02239 845 PANTHER HL01030P-RELATED 119 422 - -
Pumo11g02239 845 ProSiteProfiles Zinc finger PHD-type profile. 134 192 IPR019787 -
Pumo11g02239 845 ProSitePatterns Zinc finger PHD-type signature. 137 189 IPR019786 -
Pumo11g02239 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 247 IPR013083 -
Pumo11g02239 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 331 IPR013083 -
Pumo11g02239 845 SUPERFAMILY FYVE/PHD zinc finger 181 242 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02239 Pumo-Chr11 54882071 54889035 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02239 - - gmx:100815407 1631.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02239 11 54882071 54889035 Pumo11g02239 11 54882071 54889035 ECH