Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02204 ATGGATAGTTACGAGGCTACAAGAATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTGTCAAAGCCCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCCACACCCTCCACTCCTCCTTCTCCTTCACCCTTCATTTCTAAGCAAAACTCCACTTCTTCAAGGCTCAGTGGTATCAACATCCCTCCTGCTCTCACTATCCCAAACCCTTCTGCTTCTACTTCATGGCCTACTATGTCTGAGCTTCAAACCCCAGATGATTTAATGAGTCCCAACAATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTACCCTTTTATGCAAACGGAGGCTCAGATCCAATTGATGACTTCCAGCTTCAAGACCAGCTTTCTTTCCTGAATGATGGTTCTACTACTGGTACTGCTCACAAGAACAACCCAGATTTGTTTTACCCTCCTCACTCAGACTTGTCTTCAAGTCCTACTACTGCTGACCCTACTCTCTTTCCTTCCTACGGTTGGGGAGGGTCATTCCACCGCAGGAGTTGCTCAGTCAATGATGCTTGTTTGGGCTCTGAGGACCCTAATTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGGTGCTGCTGCTGCTGCAATGGTTGGGTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTAAGATCCAAATCTGCTCAGCAACAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCACTTTTCCGTACTCCCCAAAGTGCATGAATTTCCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGAATGGTAAACCCGGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACATTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTTATTCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCTCGGGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGCAGGTGGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGGCTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTTTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCATTCTCCTAACATGTTCAACCAAAATCTTGTTCCCTCCTTTCACATGAGTTCAGAGGCCCCAAAGGAGAGTGGTTCAACTTCTGCTCCAGCTAGTACTGCATCAGTTTCTGCTGGTCAGCAGCCGGTCAACATTTCTGTTGGCAAGGAGGTGGTGGTCAATGGTGACAATGGATATAATGAAGGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGCTCCCTTCTCTAATGGACCTAGTGAGGCCACTGATGCAGATGCCTCAGCTGCATCTGGCAACTCCAAATTTGGTGCTAGCACATTACTTCCTGCAGCATCTGCTCTTGACATGGGAACTTTCAAATCCTTTAACTGCCAAATACCAAGGTTCTCTTCTGGCCATGGAACTATTGGTATGTTCGCAGGCACTGGTGGACCGATTGGCATTTAG 2115 0.4657 MDSYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFISKQNSTSSRLSGINIPPALTIPNPSASTSWPTMSELQTPDDLMSPNNLVVGSSTSSSSLPFYANGGSDPIDDFQLQDQLSFLNDGSTTGTAHKNNPDLFYPPHSDLSSSPTTADPTLFPSYGWGGSFHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAAAAMVGSPSKIEMMEQCHELLRSKSAQQQRLAAASQLMASSTFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVPSFHMSSEAPKESGSTSAPASTASVSAGQQPVNISVGKEVVVNGDNGYNEGNGKQSSSHEDRDLQECLEHNLPDSPFASPTKADGDFMAPFSNGPSEATDADASAASGNSKFGASTLLPAASALDMGTFKSFNCQIPRFSSGHGTIGMFAGTGGPIGI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02204 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 420 IPR000504 GO:0003723
Pumo11g02204 704 Gene3D - 222 317 - -
Pumo11g02204 704 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Pumo11g02204 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 439 IPR000504 GO:0003723
Pumo11g02204 704 MobiDBLite consensus disorder prediction 79 132 - -
Pumo11g02204 704 MobiDBLite consensus disorder prediction 165 192 - -
Pumo11g02204 704 MobiDBLite consensus disorder prediction 526 579 - -
Pumo11g02204 704 SUPERFAMILY RNA-binding domain, RBD 375 453 IPR035979 GO:0003676
Pumo11g02204 704 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 629 - -
Pumo11g02204 704 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 370 441 - -
Pumo11g02204 704 CDD RRM_AtC3H46_like 365 434 IPR034365 -
Pumo11g02204 704 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Pumo11g02204 704 Gene3D - 361 459 IPR012677 -
Pumo11g02204 704 MobiDBLite consensus disorder prediction 61 132 - -
Pumo11g02204 704 MobiDBLite consensus disorder prediction 523 654 - -
Pumo11g02204 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Pumo11g02204 704 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Pumo11g02204 704 MobiDBLite consensus disorder prediction 440 465 - -
Pumo11g02204 704 MobiDBLite consensus disorder prediction 601 615 - -
Pumo11g02204 704 SMART rrm1_1 364 434 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02204 Pumo-Chr11 54461871 54479190 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02204 - - gmx:100801341 1227.23