Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02196 ATGAGTGATTCTAAGATGTTTCTATTTGGGTCATTTACTGAAGATGAAACCCGATCATTGTTGTCAAAGCAGTCTTCTGGGAAAAAGGAAAAGCCTGTGGAGAAGAATCAGCTGCAATTTGGTTCTCTGAATTCTATTACTGTTGAGTCAAACAACCTGCTAAATTCATCAAAAGCACCAGATAATGCTCCACCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAGTGTCACTGATAATTCACCTGAAGTGTCGGGAACAATTAAAGAGAATGGCAGCATTACCAATTTCTCCCTTAGCCCCACCAGTACCATTAGTGCAAATGAAGTTGAGGAAAAAACTGTGAATTCTTTTACATTACTTGTTGAAGACTGTCCCTCAAACAAGTTTACAAAATTGAGCGTAGATGCTTCTGAGGCTGAAAGCTTGAAGAACGTACATAAAACTGGCAGCGGGGATGATTCTGCATCAAAATTATCTGATCGAGAGCCCCAAAAGGCACCTAATGGGCATGCTGTTATGCATGTTAAGGATATACTGCCTCGGGGCCTTATTAACTCTGGGAATCTATGCTTTCTTAATGCAACCATGCAGGCTCTCTTGTCATGTTCACCTTTCATTCAGCTTTTACAGCAATTAAGAACTTGCAACCTTCCTAAGGTTGGATATCCCACATTGACGGCATTTGCTGAGTTCATAACCCAATTTGATATGCCAAGCACAACTAAATTAAAGAAGCAATATACAGATACTTTTGAGTCTGGAAGGCCATTTTGTCCTGTTATGTTTGAAGGTGTTCTAAAAAATTTTACTCCGGATATGCCTAATAGCATTTCAGGAAGATCAAGACAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTATTGAAGCTTGAAGGACAGTCTTCAAGTCTTAATGGTAGCAAATCTTCTCTGGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTAACAAGGACTCAAAGCTTTGTCCCTTCAGAATTAAGTGGTATTTTTGGAGGACAACTTAGAAGTTTGGTGAGAGCTAAAGGAAATAGAGCTTCTGCCACTGTTCAACCATATCTCTTGCTCCATCTTGACATCTATCCTGATGCTGTTTACACAATTGAGGATGCACTTCACTTGTTTTCTGCACCAGAAACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAAATAGTGACACTTCCTAAAATAATGATATTGCACCTGATGCGTTTTAGTTACGGAAGCCAGGGAAGCACCAAGTTGCATAAGCCTGTGCACTTTCCTCTTGAGTTGGTATTGGGTCGTGATTTGCTTGTTTCACCATCTACTGAGGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACAGCCGATGCCCAATACCCCAATGGTCGGTGGCTGCGATTTGATGATGCATCTGTTTTTGCTATTGGAACAGATAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAGACAGATGTGA 1608 0.4104 MSDSKMFLFGSFTEDETRSLLSKQSSGKKEKPVEKNQLQFGSLNSITVESNNLLNSSKAPDNAPPSDSQKCNGVKSVTDNSPEVSGTIKENGSITNFSLSPTSTISANEVEEKTVNSFTLLVEDCPSNKFTKLSVDASEAESLKNVHKTGSGDDSASKLSDREPQKAPNGHAVMHVKDILPRGLINSGNLCFLNATMQALLSCSPFIQLLQQLRTCNLPKVGYPTLTAFAEFITQFDMPSTTKLKKQYTDTFESGRPFCPVMFEGVLKNFTPDMPNSISGRSRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLHLDIYPDAVYTIEDALHLFSAPETLEGYRTSLTAKAGVVTARKSVQIVTLPKIMILHLMRFSYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTDKVLHDQAYVLFYRQM 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02196 535 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 26 535 - -
Pumo11g02196 535 SUPERFAMILY Cysteine proteinases 178 533 IPR038765 -
Pumo11g02196 535 MobiDBLite consensus disorder prediction 144 169 - -
Pumo11g02196 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 477 495 IPR018200 GO:0004843|GO:0006511
Pumo11g02196 535 MobiDBLite consensus disorder prediction 21 35 - -
Pumo11g02196 535 Gene3D Cysteine proteinases 170 534 - -
Pumo11g02196 535 MobiDBLite consensus disorder prediction 37 89 - -
Pumo11g02196 535 FunFam Ubiquitin carboxyl-terminal hydrolase 173 534 - -
Pumo11g02196 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Pumo11g02196 535 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 535 IPR028889 -
Pumo11g02196 535 MobiDBLite consensus disorder prediction 17 89 - -
Pumo11g02196 535 Pfam Ubiquitin carboxyl-terminal hydrolase 183 532 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02196 Pumo-Chr11 54357149 54362475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02196 179 535 Miscellaneous Gene Families AT2G24640 28.338 1.56e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02196 K11841 - gmx:100816791 951.429