Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02195 ATGAATTCCCTCGTTGCCCAAACCGAACTTTCGGCTCCAATGGATTCAAAACCCAAACTTTGGAAGACACCACCTTCAACTTCTAGTAGCTGTAGCAGCAGCAGTGAGAGCGATGACAGCCCCTTCTGTTCCCAACGCATGCCCGTAGTCTCCGGCTTCTCCCACTCATTCCGATCACTCGCAGTTCTCTCTGGACACGTGGGGTCCGTTTCATGCTTGGCCCTGTGCGGTGAGTTCATCCTCAGTGCCTCGCAGGGTAAGGATATCATAGTGTGGCAGCAACCAGATTTGAGGGTGTTTGCAAAGTTCGGACAAGGAGATGGATCAGTGAAGGCACTTGCAACGGTTGGGAACAAGGTTTTCACCGCACATCAAGATAGCAGGATAAGAGTTTGGAAGGTGTCAAGGAGCTCAGAGAACGTGTTCAAGCTCGTTGATACTCTTCCCACAACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACTCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGACAGCATTTCATGCTTGACGGTTTATAACGGGTTCTTTTATTCTGGTTCGTGGGACAAGACTCTTAAGGTGTGGAGGCTCTCGGATTTGAAGTGTTTGGAGTCTATAAAGGCTCATGATGATGCTATCAATGGGTTGGTGGCGTGTAAAGGGGTTGTGTATTCTGCTTCTGCAGATGGGAAGATTAAGGCTTGGGGGAGAAAAGATGGGAAGGGGGAGCATGCTTTGAAGGGGGTTTTGGAGGGTCATAAAGATGTTTCTTTTAATGCTGTTGTTGTTTCTGAAGATGGGAAATGGGTCTATGGAGGAGGGTCTGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGGGGGTGTGAGAGTTGGAAGCTGGTTTCTGAGACCAAGGCACATGAGATGGCTGTGTTGTGTATGTGTCTAATGGGACAGTTTTTGTGCAGTGGATCAGCGGATAAAAGCATAGGGATTTGGAGGAGAGAGGTTTTTGGTAAGCTTTGTAAAGTTGGAGTCATAAGTGGCCATGAAGGGCCTGTGAAGTGTTTGCAGGCCTCATCTAATAGGATTGGTGGTGGCTTTTTATTGTACAGTGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATAATGATGCAGAAGAAGTAGAGGATAACAACTCTACAAGATTTGGCACAGTGAATCAGTCCATCATCCCATGTTAG 1245 0.4779 MNSLVAQTELSAPMDSKPKLWKTPPSTSSSCSSSSESDDSPFCSQRMPVVSGFSHSFRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGDGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGFFYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKDGKGEHALKGVLEGHKDVSFNAVVVSEDGKWVYGGGSDGFVMGWEGSGGCESWKLVSETKAHEMAVLCMCLMGQFLCSGSADKSIGIWRREVFGKLCKVGVISGHEGPVKCLQASSNRIGGGFLLYSGSLDKSVRVWWVPRYNNDAEEVEDNNSTRFGTVNQSIIPC 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02195 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Pumo11g02195 414 Pfam WD domain, G-beta repeat 346 384 IPR001680 GO:0005515
Pumo11g02195 414 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Pumo11g02195 414 Pfam WD domain, G-beta repeat 177 204 IPR001680 GO:0005515
Pumo11g02195 414 Gene3D - 163 259 IPR015943 GO:0005515
Pumo11g02195 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 384 IPR001680 GO:0005515
Pumo11g02195 414 MobiDBLite consensus disorder prediction 21 39 - -
Pumo11g02195 414 SUPERFAMILY WD40 repeat-like 57 388 IPR036322 GO:0005515
Pumo11g02195 414 MobiDBLite consensus disorder prediction 1 39 - -
Pumo11g02195 414 Gene3D - 6 156 IPR015943 GO:0005515
Pumo11g02195 414 SMART WD40_4 208 245 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 342 385 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 299 336 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 252 292 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 168 205 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 56 93 IPR001680 GO:0005515
Pumo11g02195 414 SMART WD40_4 96 133 IPR001680 GO:0005515
Pumo11g02195 414 Gene3D - 260 410 IPR015943 GO:0005515
Pumo11g02195 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 388 IPR045182 -
Pumo11g02195 414 FunFam BnaA09g28200D protein 165 249 - -
Pumo11g02195 414 CDD WD40 59 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02195 Pumo-Chr11 54353554 54355344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02195 165 340 Miscellaneous Gene Families AT5G08390 22.624 1.10e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02195 - - gmx:100775295 754.207