Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02189 ATGTCTCCACAAACCCCAACTATCTCACTTTTCATTGTCCTCGCTTCATTAGTCGTATGTAATGGCCATTACATAGAGGAACCATTTTATAAAACAAATGCTAAACACCACCCTGTGCATGATGGGAGATTGATCAAGACAAAACATAGACATTTTGGTCTTATAAAAAGGGCTAATAGAGCTACCTATCTTTCTTCTAATCCTCGTGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGAGATGACAGCGAGGCATTTGGAAAGGCATGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATAACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGACTCAAATGTCGGCATACCAAGAAGATAGACAACACTGGATTGTGTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCGCATTTAATGGCAAAGGGAAAAAGTGGTGGCAAAGCTCCTGCAAAGTCAACACTAACCTTCCATGCAACGACGGACCAAGACCAAAAGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACAAACCTGAGGTTTAAAGATTCACCACAAATGCATGTAAGCTTTGAAGGATGCTTCAATGTTATTGTTTCGAATCTCGTCATCAGAGCACCAGGTGACAGCCCCAACACTGATGGAATTCATGTCGCAGACACACAAAATATTGTCATAAGCAACAGTGATATTGGGACAGGTGATGATTGTATTTCAATAATAAGCGGGTCCCAAAACGTACGAGCCACAGATGTCACGTGCGGACCAGGACATGGAATAAGCATCGGAAGCTTGGGAGCTGATAACTCAGAAGCTGAAGTCTCCAATGTGGTAGTGAACAGAGCAACCTTAACAGGAACGACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAGCGATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGATCAAGCAAAGCCATGCCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTATACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCCAAGCCGTCCCTTGCAGACAAATATACCTGCAGGATGTGATTTTAGAACCCCAGGGCCATGGTGGCACCATTGCTACATGTGAAAATGTTAGATATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1323 0.424 MSPQTPTISLFIVLASLVVCNGHYIEEPFYKTNAKHHPVHDGRLIKTKHRHFGLIKRANRATYLSSNPRGTVSVDDFGAKADGRDDSEAFGKAWNEACSRGAILVVPENRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIVFDSVSNFRVGGGGAFNGKGKKWWQSSCKVNTNLPCNDGPRPKAVTFYQCNNLKVTNLRFKDSPQMHVSFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDVTCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDQAKPCQEQDSAVQLSNVLYQNIRGTSASEVAIKFDCSQAVPCRQIYLQDVILEPQGHGGTIATCENVRYVNRGKFFPQCTP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02189 440 Gene3D - 57 435 IPR012334 -
Pumo11g02189 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Pumo11g02189 440 PANTHER - 71 426 - -
Pumo11g02189 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Pumo11g02189 440 SUPERFAMILY Pectin lyase-like 67 439 IPR011050 -
Pumo11g02189 440 FunFam Polygalacturonase QRT2 57 439 - -
Pumo11g02189 440 SMART pbh1 334 355 IPR006626 -
Pumo11g02189 440 SMART pbh1 252 273 IPR006626 -
Pumo11g02189 440 SMART pbh1 225 251 IPR006626 -
Pumo11g02189 440 SMART pbh1 305 326 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02189 Pumo-Chr11 54302583 54306284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02189 29 439 Glycoside Hydrolase AT3G07970 56.627 4.98e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02189 K01184 - gmx:732596 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02189 11 54302583 54306284 Pumo11g02189 11 54302583 54306284 ECH