Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02178 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTACTCTGATATTATAGAAAAACTTTCTTATGGCAGTGATTTTGGATCCACAAACTATCAGATTGTTCCTACAAAATCTGTAGTAGTTGCCAAGAAGTCATCCAACTACACTCCAACTTTTCCCGCATCCAACCGGCAGAATCAGTCCATTAAGGCTCTTAAGGAGCATGTTGATGATGCCCCTACCATTGCGGATCCATGGTTTAAGAGTTACAATTCTATTGACTTAGAGGTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAACCTTTCCTTTGAAAGGGAAGTGCTAACCGAACATTCAAGTAAAGAAAAAAACTGTAGGAAAGTGGCAGTGACTTGTTCTGGGGTGTCTGCAAGGCAAAGAAGAATGAATACCAAGAGGAAGACCGCGGTTAAAACTTGTGGTGCTGTGCAGCTGAAGTCCAAAATCAGTCCAGAGCTGCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGGAATTGCTCTCTCATGCGGAAGTTGTAAACCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGACTAAAGGAAAGACTAGGATGTGAACCCTCTGATGATCAAATGGCAACTTCATTGAAGATTTCTCGCACTGAACTACGAGCAAGAATGATAGAGTGCTCTCTGGCGAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAAATATGATAACCTGGGTGCAGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTGCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCGTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTACTCCAACTATTGATAGGATTGCGAAATACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAATCAACAAAATTATCTCGCTTGATAGAGAAGCATTCCCCTCTCTGAATGGTCTACAAGGAGAAACTCATCATAGTTATATCGCAGATAATCGCGTTGAGAACATCCCGTGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATTCGTCTTTATTATGGACTGGATAAAGAATGTCTGACATGGGAAGACATTAGTAAACGGATAGGTTTGTCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAGACAAATGGAGGCCATGCTATTGAAACATTAA 1512 0.4094 MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTNYQIVPTKSVVVAKKSSNYTPTFPASNRQNQSIKALKEHVDDAPTIADPWFKSYNSIDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTEHSSKEKNCRKVAVTCSGVSARQRRMNTKRKTAVKTCGAVQLKSKISPELLQNRLKGYVKGVVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKERLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAINKIISLDREAFPSLNGLQGETHHSYIADNRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02178 503 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 114 500 - -
Pumo11g02178 503 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 187 334 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 336 392 IPR013324 -
Pumo11g02178 503 NCBIfam sigma-70 family RNA polymerase sigma factor 260 490 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 Pfam Sigma-70 region 2 266 333 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 ProSitePatterns Sigma-70 factors family signature 1. 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 Pfam Sigma-70 region 3 343 414 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 Gene3D - 419 498 IPR036388 -
Pumo11g02178 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 494 IPR013324 -
Pumo11g02178 503 CDD Sigma70_r4 430 488 - -
Pumo11g02178 503 PRINTS Major sigma-70 factor signature 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 PRINTS Major sigma-70 factor signature 441 453 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 PRINTS Major sigma-70 factor signature 476 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 PRINTS Major sigma-70 factor signature 312 320 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 PRINTS Major sigma-70 factor signature 461 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 Pfam Sigma-70, region 4 440 489 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pumo11g02178 503 Gene3D RNA Polymerase Primary Sigma Factor 54 334 - -
Pumo11g02178 503 Gene3D - 335 386 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02178 Pumo-Chr11 54209885 54216554 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02178 K03086 - gmx:100801884 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02178 11 54209885 54216554 Pumo11g02178 11 54209885 54216554 ECH