Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02166 ATGGGAATTGTTGGCTTTGAAATTAATGCGAATTCTGCTTCTGCTTCTGCTTCTGCTTTGCATTATGGTGCTAATTCGTTCTCTTCCTATACGGTTCCTATTTCTCTGAGACCCTTTTTCGGGAATGCCTTGAACGCGAGGGTTGCAGGGAAGATTCGGGTCTCTCATGCTCGAAAGCCCAAATTCGGGGCAGTTATTGCTTCACTGAGTGGTGGCTCTAATGCTGGGTTGATTAGAGACGCGCTTCTTCCCAAAGACTCAGAATTTAAGCCATCCTTCGACGAATATTTGAAGGCTATGGAATCTGCTAGAACTGTTAGGGGCAAGAAGCGTGCTGCCACTACTCAAAAACAGAAGACCGTGGAAAAGGGTGATAAAGGGGATAGCACTAAAAGATTTAACAGTGTTGGAAAGAAAATTGATAGAAAAGACGGGCTTCAAAAAGTTGAAGAAGGTTCCTCCAGAAGTAACGGTAAGGTCAGAAGAACAGCAACTAAAGGATTTAGAAGTGAAAATGATGGGAAAGAAAGCAACCTTGATGTAAAGGCAAAGCAGAAAAATGGAGCAATTGTAAGACAAAATGGCCCGTTGAAACGCCAGAGTCATAGTTTAGAACCAGAATCTGATGATTGCAGTGAGATTAATAAAAGTGGTAGTGGAAGGATGAGCAAGAGCATGATTAGGTCTAGTTTGAATGGTAGCCATGGGAGTGTCAGAGAGAGAGGAGTTACTCATGATTTATATTCTTCAAGGATGTCCGGAGAAAAGGTTGCTAGTAGCAGACAAAGGGATTACAACACGCAGGGTAAAACCCCTGATGGAGATAGAATTGTAGCTAGACAACAAGTTCAGGATAGAGGGCTTGGTAGAAGACATACTGAGAATGGAAGTTTGGTAAATAGAAATGGACTGTCAAATGTCAAATTGAACGGAAGCCGTAAGCGTTTCATTGATAGGGGTTATGATTCTGACAATTTGGAGGTGGACCGAGCAGCATTCGAGAATCTTGAGGACCCAAACAGTGTTATCAGAAAGTCACAATTTTCACATAAGGAAATGGAGGAGAAAATCCAAACACTAGCCAATTTGTTAAATGGTGCTGATATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTAATGACTATTCCATAACAAGGATTATCATAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCCATAAGCTAAGGCATATATATACCGCTGCTCTTGATGCACTTGGAAAGTCGAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCATATCCTGATTTAGTAGCTTATCATAGTATTGCTGTGACTCTTGGACAAGCAGGGCACATGAAGGAACTTTTTGATGTGATTGATATTATGCGATCACCACCTAAGAAGAAGTTCAAAACAGGGATATTTGAGAACTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAGGCGGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAACAAGGACAACAGCCTTCTGCCACAACTTACGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCCTTCATTCCTAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGAAAGAGGGAAAAACTGATGAGGCTATACTTGCTGTCCAAGAAATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCATGAGGCACTAAAGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCAAATCTGGTTACTTGTAACATAATGCTAAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATCGTCTCAGGGGAAATAATGATTACAAAATGCTGGTGGTCCCAGATACGTACACATTCAACACCATGTTAGATGCATGTGTTGCAGACAAGAGATGGGATTATTTTGATCATGTCTATCAAAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGTCATCTTCGAATGATATTGGAGGCTTCAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACTTGGAAGCACTTAACCGACACAGATCGTATTCCACCAACTCCTCTGATCAAGGAGAGGTTCTGTGCAATGCTTGAGAAAGATGACTATGTTACTGCTCTCACATGTATCGCTAACAATCCCCCAAAAGACTTGCAGCCATTTTCCAAATCGTCCTGGTTGAAACTATTCAAAGAAAATTCTCAACGATTTCAGAAGGATACGATTGTTGGACTAATGAACGAGGCCAGCAATATAGTTTCCAATAATAGTTTGCCAAATCCAACACTTGAGTATTTAATTCAATCATGCAAAGAATTTCTTTTTGCCACTGACCTCAATGCAGCTGACATGGATTCAGTGAAAAATGTAGTTGTGGTAGAGAGTAAGCGGGTAGTAGACAACTCTAGATGA 2760 0.4076 MGIVGFEINANSASASASALHYGANSFSSYTVPISLRPFFGNALNARVAGKIRVSHARKPKFGAVIASLSGGSNAGLIRDALLPKDSEFKPSFDEYLKAMESARTVRGKKRAATTQKQKTVEKGDKGDSTKRFNSVGKKIDRKDGLQKVEEGSSRSNGKVRRTATKGFRSENDGKESNLDVKAKQKNGAIVRQNGPLKRQSHSLEPESDDCSEINKSGSGRMSKSMIRSSLNGSHGSVRERGVTHDLYSSRMSGEKVASSRQRDYNTQGKTPDGDRIVARQQVQDRGLGRRHTENGSLVNRNGLSNVKLNGSRKRFIDRGYDSDNLEVDRAAFENLEDPNSVIRKSQFSHKEMEEKIQTLANLLNGADINLPEWMFSKMIRSARLKFNDYSITRIIIILGKLGNWRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFENWDPRLEPDIVVYHAVLNACVRRKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLWKEGKTDEAILAVQEMERRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICAPNLVTCNIMLKAYLEHGMFQEAKALFEQMSENANRLRGNNDYKMLVVPDTYTFNTMLDACVADKRWDYFDHVYQRMLYHGYHFNPKRHLRMILEASKAGKERPLEITWKHLTDTDRIPPTPLIKERFCAMLEKDDYVTALTCIANNPPKDLQPFSKSSWLKLFKENSQRFQKDTIVGLMNEASNIVSNNSLPNPTLEYLIQSCKEFLFATDLNAADMDSVKNVVVVESKRVVDNSR 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02166 919 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Pumo11g02166 919 PANTHER OS01G0674700 PROTEIN 74 898 IPR044645 GO:0009658
Pumo11g02166 919 MobiDBLite consensus disorder prediction 215 237 - -
Pumo11g02166 919 Pfam Pentatricopeptide repeat domain 509 558 IPR002885 -
Pumo11g02166 919 Pfam Pentatricopeptide repeat domain 651 696 IPR002885 -
Pumo11g02166 919 FunFam Pentatricopeptide repeat-containing protein 355 501 - -
Pumo11g02166 919 SUPERFAMILY TPR-like 497 715 IPR011990 GO:0005515
Pumo11g02166 919 Coils Coil 350 370 - -
Pumo11g02166 919 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 685 719 IPR002885 -
Pumo11g02166 919 MobiDBLite consensus disorder prediction 115 157 - -
Pumo11g02166 919 NCBIfam pentatricopeptide repeat 687 715 IPR002885 -
Pumo11g02166 919 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Pumo11g02166 919 Pfam PPR repeat 584 613 IPR002885 -
Pumo11g02166 919 Pfam PPR repeat 429 455 IPR002885 -
Pumo11g02166 919 Pfam PPR repeat 734 763 IPR002885 -
Pumo11g02166 919 MobiDBLite consensus disorder prediction 164 182 - -
Pumo11g02166 919 MobiDBLite consensus disorder prediction 253 267 - -
Pumo11g02166 919 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Pumo11g02166 919 Coils Coil 702 722 - -
Pumo11g02166 919 Gene3D Tetratricopeptide repeat domain 558 667 IPR011990 GO:0005515
Pumo11g02166 919 Gene3D Tetratricopeptide repeat domain 668 785 IPR011990 GO:0005515
Pumo11g02166 919 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Pumo11g02166 919 Gene3D Tetratricopeptide repeat domain 357 557 IPR011990 GO:0005515
Pumo11g02166 919 MobiDBLite consensus disorder prediction 107 273 - -
Pumo11g02166 919 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02166 Pumo-Chr11 54076007 54083478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02166 532 782 Glycosyltransferase AT1G05670 21.569 1.26e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02166 - - gmx:100787028 1527.69