Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02142 ATGAGTGAAAATTTGATGGGAAGAGTCAACGCTTTGGGGGAGCGTCTCAAAATTGGTGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGCATGAGTTCTGTGAGCTTCAAGGTCAAGGAGTTTTTCCAGGACTCAAGCCATGCTGATAAACTCGTTGGGGAAGCTACCTATGAGGCTCTTCATGAGCCTGACTGGGCTATCATTCTTCACATCTGTGACTTGGTCAATGCTGATAAACTTAACACTGCTGAATTGGTACGTGCTATAAAGAAACGGGTCGTGGCCAAGAGTACTCCTAGAGGTCAGTACCTGGCTTTGGTTTTGCTTGAAGCATTAGTCAAGAATTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAGACTGTTGTTAATAACCGGAATAAGGCTTTGATGATGATTGAGGCATGGGGAGAGTCAACTATCGAGCTTCGCTATTTGCCTGTCTATGCAGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGATTCCCTGGCCGTGACAACGAAAGCTTGGCTCCTATTTCTACTCCTCCTCGTTCTGCCACTACTCCAGAGGCTGATGTCAGTCTTGCAAATCTTATTCAGTATGATATTCATGGGCAAAGTTTATCATCTGTTACTCCGCCACGCTCTGCCACTACTCCAGAGGCTGATGTCAGTCTTGCACATCTTATGCAGCATGATATTCATGTGCAAAATTTTACGTCTGAACAAATAAAGGAAGCTTTTGATGTCGCCAGAAATACCATTGAGCTTCTTTCCACTGTGTTATCTTCTTCAACGCAGCAGGATGTTTTAAAGGATGATTTGACCACCACATTAGTACAACAGTGCCGTCAATCCCAGACTACTGTCCATAGAATCGTTGAGACTGCTTGGGATAATGAAGCACTGCTTTTTGAGGCCTTGAATGTTAATGATGAGATTCAGAAGGTTCTCTCCAAATACGAAGAGTTGAAGAAGAAGAAGAAGCCTACAGTTGTTCCACTTGAACCTGAACTTGCTATATTACCTGTTGCTATTGAGCCTGATGAGTCACCCCGTTTTACAAAAGAGGAAGCCCTGATTAGAAAGCCAGCTGGTTCGAGAATTGGGAGCCACGATGACATGTTGGATGATCTTGATGAGATGATTTTTGGGAAAAAGGGTAGGGATGCATTTGATGGGGGACAAGATCCAAAGAAACAACAATCATCAAAAGATGACCTCATCTCCTTCTAA 1281 0.4418 MSENLMGRVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHADKLVGEATYEALHEPDWAIILHICDLVNADKLNTAELVRAIKKRVVAKSTPRGQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPQTVVNNRNKALMMIEAWGESTIELRYLPVYAETYKSLKSRGIRFPGRDNESLAPISTPPRSATTPEADVSLANLIQYDIHGQSLSSVTPPRSATTPEADVSLAHLMQHDIHVQNFTSEQIKEAFDVARNTIELLSTVLSSSTQQDVLKDDLTTTLVQQCRQSQTTVHRIVETAWDNEALLFEALNVNDEIQKVLSKYEELKKKKKPTVVPLEPELAILPVAIEPDESPRFTKEEALIRKPAGSRIGSHDDMLDDLDEMIFGKKGRDAFDGGQDPKKQQSSKDDLISF 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02142 426 ProSiteProfiles VHS domain profile. 55 184 IPR002014 GO:0035091|GO:0043130
Pumo11g02142 426 CDD VHS 48 178 - -
Pumo11g02142 426 Coils Coil 322 342 - -
Pumo11g02142 426 PANTHER TOM1-LIKE PROTEIN 1 1 426 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pumo11g02142 426 SUPERFAMILY ENTH/VHS domain 44 184 IPR008942 -
Pumo11g02142 426 Gene3D - 39 202 IPR008942 -
Pumo11g02142 426 PIRSF TOM1 32 422 IPR014645 -
Pumo11g02142 426 MobiDBLite consensus disorder prediction 402 426 - -
Pumo11g02142 426 CDD GAT_GGA-like_plant 263 339 - -
Pumo11g02142 426 Gene3D - 257 349 IPR038425 -
Pumo11g02142 426 SMART VHS_2 48 180 IPR002014 GO:0035091|GO:0043130
Pumo11g02142 426 Pfam GAT domain 267 341 IPR004152 GO:0035091|GO:0043130
Pumo11g02142 426 Pfam VHS domain 46 180 IPR002014 GO:0035091|GO:0043130
Pumo11g02142 426 ProSiteProfiles GAT domain profile. 254 341 IPR004152 GO:0035091|GO:0043130
Pumo11g02142 426 SUPERFAMILY GAT-like domain 182 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02142 Pumo-Chr11 53791764 53793816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02142 - - gmx:100784925 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02142 11 53791764 53793816 Pumo11g02142 11 53791764 53793816 ECH