Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02047 ATGGAGACAGGTTCGGGCAGCCTGAGCAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGCTAGACACTGACAGAGATGGCAAACTCTCTGTGAAAGAGCTTCAACCTGCTGTTGCTGACATAGGTGCTGCTCTCGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTCTTTAATGAATTCACACATGGGAAGCAGGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGACCCTATTGTGATACTTCGCATTGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGGCATCTATATTCTCTCAGATTGAGTCCCCTGACAGATCACTTCATGACCATATAATTGAAGCTTTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTGAGCAACATTGTGGAACCGTCACTGCTATCTCAAGATGGCTCTGATTTGGATAAGCCTGTTTCTCAAGAGGCATTTTTGGAGGAATTTAAGATCGTGGCATTGAGTGTGGCTAATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTCTTATCCAACAAGTTTGAATTGGACAAGACTTTGAACTCAGCTATAGAGACTTTGCCCAAAGATCGAAATGGAAAGCTGTCAAAGGAGTATCTAAGGGTGGCCCTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCTGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGCCTTTAAGATGGTGAATGCAGATGATGCGAAGATGGTGAAAGAAGACGAGTTCAAGAAACTATTAACTGAAATACTGGGGAGCATAATGTTGCAGTTGGAGGGAAATCCCATATCAGTTTCTTCAAATTCGGTAGTGCACGAGCCTCTAGACTCATCTTCTACACTTCTGCAGCCATCCTCTAGTGAAACTGCGGCATAG 1128 0.4459 METGSGSLSRKKSGGNGQVLDGSNIMELVGNQQVFTTFVDHKFHELDTDRDGKLSVKELQPAVADIGAALGLPAHGTNPDSDHIYSEVFNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSGYEAEMASIFSQIESPDRSLHDHIIEAFGKLTVEQGIPPTSDSWVLSNIVEPSLLSQDGSDLDKPVSQEAFLEEFKIVALSVANRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSAIETLPKDRNGKLSKEYLRVALDTVAPSAGLPPVGAIEEMDKVIGEAFKMVNADDAKMVKEDEFKKLLTEILGSIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPSSSETAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02047 375 ProSiteProfiles EF-hand calcium-binding domain profile. 256 291 IPR002048 GO:0005509
Pumo11g02047 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Pumo11g02047 375 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g02047 375 Gene3D - 37 339 - -
Pumo11g02047 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Pumo11g02047 375 SUPERFAMILY EF-hand 42 345 IPR011992 -
Pumo11g02047 375 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Pumo11g02047 375 SMART efh_1 38 66 IPR002048 GO:0005509
Pumo11g02047 375 SMART efh_1 260 288 IPR002048 GO:0005509
Pumo11g02047 375 SMART efh_1 306 334 IPR002048 GO:0005509
Pumo11g02047 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02047 Pumo-Chr11 52491370 52495615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02047 18 373 EF-hand Containing Proteins AT4G38810 70.278 4.17e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02047 - - gmx:100820516 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02047 11 52491370 52495615 Pumo11g02047 11 52491370 52495615 ECH