Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02012 ATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATTTGTTGTTCCATGGAAGAAACACCCAATGCAGTCGTTCGTACAGTCTGGTCCCAATGGTGATAGAGCACTCCTCCCGAGGAGAGAGGGCATACGACATCTTCTCGCGCCTTCTCAAGGAGCGCATTATCTGCATCAACGGACCCATCTCCGACGACACCGCTCATGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCCACATGTACCTCAATTCCCCCGGTGGCGCCGTCACCGCAGGGCTTGCTATCTATGATACCATGCAGTATATTCGGTCTCCGGTCAATACAATCTGTTTGGGTCAGGCTGCGTCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCAAGGGGGAGAGGCGGGCTCTTCCAAATGCATCAATCATGATTCACCAGCCTTCTGGCGGCTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTGAATGAGTTGTATGCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGGGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGCCTCATTGATGAGGTTATTGATCAGAGACCTATGGCTTTGGTTTCTGATGCCGTTGGTAATGAAGGCAAAGATAAAGGTTCCAATTAG 711 0.5049 MRGVVKAFARNLLFHGRNTQCSRSYSLVPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNASIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPQEAKEFGLIDEVIDQRPMALVSDAVGNEGKDKGSN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02012 236 FunFam ATP-dependent Clp protease proteolytic subunit 26 218 - -
Pumo11g02012 236 CDD S14_ClpP_2 43 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 PRINTS Clp protease catalytic subunit P signature 43 58 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 PRINTS Clp protease catalytic subunit P signature 135 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 PRINTS Clp protease catalytic subunit P signature 83 103 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 PRINTS Clp protease catalytic subunit P signature 114 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 SUPERFAMILY ClpP/crotonase 35 218 IPR029045 -
Pumo11g02012 236 Pfam Clp protease 37 216 IPR023562 -
Pumo11g02012 236 Gene3D - 16 222 - -
Pumo11g02012 236 ProSitePatterns Endopeptidase Clp histidine active site. 136 149 IPR033135 -
Pumo11g02012 236 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 27 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g02012 236 ProSitePatterns Endopeptidase Clp serine active site. 114 125 IPR018215 -
Pumo11g02012 236 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 221 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02012 Pumo-Chr11 52186414 52187966 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02012 K01358 - gmx:100791303 457.603