Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01984 ATGGCGAAAGAGGGAAGCGACATTGATGAAGTGAACTATGCATTAGATGGCGTGGGAGAAGAAGAAGAAGAAGAAGAGGAAGAAAACGCAGCACAGGAGGAAGATGACAACGACATGGAAGAAGAAGAAGAAGAATATACTTTCAGATTCAAAACTGGGATGAATCCTTTGGACTTTGTTGATAATAATGATAATTCTGGCATTCAACCCTACCTGCTATTCGAGCGTCTTGAACAGGAAGCCCTTGCCGATAAAAAGCGAAAAGCAACTCAACAATGCCACAGTGAAGAACCACCTTCTAAGATGGCTAGGGAAGGTGATATTTCTGGGGCAAAGATAGCTGAGATAATGGAAGCAATGGATTATTATGGTGTGCGCAAGAGATCGAGAAAGCCTAAAAAGAGAGGCAGGCGAAAAGGATCAAAGAATAAACTTGACCCTAAGCTAACACGGATGCTGGGTGATGCCACACTTCACTATGCATGTGGCCATTATGACAAGGCTAAAGCTGTGTTGCTTGAAGTTATTAGGCTGGATCCAAATTTGCCTGAATCGTATCACACCCTTGGACTTGTCTATAGTTCACTCGAGGATTACGAAAGAGCTATGGCTTTTTACTTGATTGCTGCTCATTTGAATCCAAAAGATTCATCTCTTTGGAAAACGATTTTTATCTGGTCCATAGAACAAGGTTATATTGATCAAGCCGGTCATTGTCTTTTAAAAGCAATAAAAGCAGATCCCAAAGATGTTACTCTTAGAGGTCATCTTGCAAGGCTTTATGCTGAACTTGGACATTATCAAAAAGCTGCTGTGACATATGAGCAAGTACATCAACTCTGTTGTGAGAATATTGATGCACTGAAAGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATACTCTGTTCGTATTCTTGAAGACTATATTAAGAGTCAACCTGACAGAGCAAATGCAAGTGTAGTTGATCTGCTGGGTACCATATTGATGGAAACTAAGGCGCATGATAGAGCTCTGCAGCATATTGAACATGCTCAAGTGGTAAATGCAAGGAAAGAATTGCCTTTGAATTTGAAAATTAAGGCTGGAATTTGCCATGCTCATCTTGGAAACATGGAGAAGTCTCAGGTTCTCTTTAATGATTTGAAGCCAGAGAATGCCAGCGAGCATATTGACTTGGTTACTGAGGTTGCTGACTCATTAATGGGTCTTGAACATTATAATCCTGCATTGAATTATTATTTGATGTTGGAAGGAAATATTGAAAATAAAAATGGTCTTCTATATCTGAAAATTGCTAGGTGTTATATGTCCTTGAAAGAAAGGTCACAAGCAATTCTCTTTTTTTCCAAAGCTCTTGAAACACTACAAGATGATGTTGATGCACGTATTACTCTAGCTTCGCTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCCATTTCCTTGCTGTCTCCTCCAAAGGATTCTGATTTTGGTGAAGCACCTTCTGAAAAGTCAAATAGATGGTGGGTTGACATAAGAATAAAACTGAAGCTCTGCAACATTTATTGGAATAGAGGGACGCTTGATGATTTTGTGGATACAATTTTCCCTTTGATTCGTGAATCATTGTATGTTGCAACTCTTCGACAGAAGGGTAAATCAAAAAGGCGACTCTCCAAAAGAGATCTGGTTGAAAGGGTTAGGGTACTGGATGGTCCGGAAAAGCATAATATATTTCGAGGATTTAGATCAGTAGCTGCACCATCTGACCTGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAGAAGAAGGCACTTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCTGGAATTGACTGGCTAAGTGATGATTCAGATGATGAGCCTCTGAAAGAAAACAGAGAACCTCCCTTGTGTAATCTTCTCAAAGATGAAGAACACCACCAGCTAATAATTGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCCCATACATCTCTGTCTACTGACAAGAAAGAGGAGCTTCGATCTCTTGGAGCTCAAATGGCATACAACACCACAGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTACAAATTTGTACGTGGTATGCAAGGAAAGTTTGTGGATTGTGTGCCTCCTATCCTCATTTCTGGGCATCAGTTTACCGTATGTAGCCATCATCAAGACGCAGCAAGGAAATACCTCGAAGCCTATAAACTATTGCCAGAGAATCCCTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTAGCACTGGGTTTCAGACTTCAAAATAAGCATCAATGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGAGAATCTGTGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCATTCCATCATGTTGGTTTTGTAACTCTGGCGGCTTCTTATTATGAGAAAGTGATTGCTATTTGCGAGAAAGACTATTCAATTCCAAAACTTCCCAATGAAAATCCAGATGTCATCGAAACTCATAAACCTGGTTACTGCGACCTTCGCAGAGAGGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGTGCTCTTGATCTTGCTAGGCAAGTTCTCAAAGATCATTGTACCTTGTGA 2766 0.4017 MAKEGSDIDEVNYALDGVGEEEEEEEEENAAQEEDDNDMEEEEEEYTFRFKTGMNPLDFVDNNDNSGIQPYLLFERLEQEALADKKRKATQQCHSEEPPSKMAREGDISGAKIAEIMEAMDYYGVRKRSRKPKKRGRRKGSKNKLDPKLTRMLGDATLHYACGHYDKAKAVLLEVIRLDPNLPESYHTLGLVYSSLEDYERAMAFYLIAAHLNPKDSSLWKTIFIWSIEQGYIDQAGHCLLKAIKADPKDVTLRGHLARLYAELGHYQKAAVTYEQVHQLCCENIDALKAAAKFYKKCGQVEYSVRILEDYIKSQPDRANASVVDLLGTILMETKAHDRALQHIEHAQVVNARKELPLNLKIKAGICHAHLGNMEKSQVLFNDLKPENASEHIDLVTEVADSLMGLEHYNPALNYYLMLEGNIENKNGLLYLKIARCYMSLKERSQAILFFSKALETLQDDVDARITLASLLLEEGKEDEAISLLSPPKDSDFGEAPSEKSNRWWVDIRIKLKLCNIYWNRGTLDDFVDTIFPLIRESLYVATLRQKGKSKRRLSKRDLVERVRVLDGPEKHNIFRGFRSVAAPSDLLKASRAKKLLQKKALEKEKRKAEALASGIDWLSDDSDDEPLKENREPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAHTSLSTDKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRGMQGKFVDCVPPILISGHQFTVCSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLRICENSQESLYNIARAFHHVGFVTLAASYYEKVIAICEKDYSIPKLPNENPDVIETHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01984 921 FunFam General transcription factor 3C polypeptide 3 isoform A 112 356 - -
Pumo11g01984 921 Gene3D Tetratricopeptide repeat domain 581 920 IPR011990 GO:0005515
Pumo11g01984 921 MobiDBLite consensus disorder prediction 14 43 - -
Pumo11g01984 921 Coils Coil 592 612 - -
Pumo11g01984 921 Pfam Tetratricopeptide repeat 156 216 - -
Pumo11g01984 921 SUPERFAMILY TPR-like 762 916 IPR011990 GO:0005515
Pumo11g01984 921 MobiDBLite consensus disorder prediction 127 142 - -
Pumo11g01984 921 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Pumo11g01984 921 MobiDBLite consensus disorder prediction 1 46 - -
Pumo11g01984 921 Pfam Tetratricopeptide repeat 255 276 IPR019734 GO:0005515
Pumo11g01984 921 ProSiteProfiles TPR repeat profile. 428 461 IPR019734 GO:0005515
Pumo11g01984 921 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 10 921 IPR039340 GO:0006383
Pumo11g01984 921 Coils Coil 15 45 - -
Pumo11g01984 921 MobiDBLite consensus disorder prediction 126 146 - -
Pumo11g01984 921 Gene3D Tetratricopeptide repeat domain 137 355 IPR011990 GO:0005515
Pumo11g01984 921 Gene3D Tetratricopeptide repeat domain 356 529 IPR011990 GO:0005515
Pumo11g01984 921 SMART tpr_5 646 679 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 251 284 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 428 461 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 149 182 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 321 354 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 833 866 IPR019734 GO:0005515
Pumo11g01984 921 SMART tpr_5 183 216 IPR019734 GO:0005515
Pumo11g01984 921 SUPERFAMILY TPR-like 160 483 IPR011990 GO:0005515
Pumo11g01984 921 FunFam General transcription factor 3C polypeptide 3 555 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01984 Pumo-Chr11 51774104 51787574 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01984 K15201 - gmx:100804533 1642.09