Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo11g01969 | ATGGCTTCACCCGCGTGGTTGCCGCAGGAGGCGCAGCCACCTGTTTCTGGAGAAACGCCTCTTTCTATGGCTTCTTCCACCCCTAATTCCGCTCCCGCAACTCCTTCCACCGTTCCCGCACCTCCATTTGCTTACGGCGCACTTCAGAACATTAATGCTTCCGGGAATTCTCAGCAGTCATCGACGCATCCTGTGATAAAATCCAATTCTGCAGCGAATCCCATGGTTGTTCAACCTCCAGTTCCTAGTGTCTCTTCACATCCTCCTCCTTCATTTTCATATAATATTCCCCAAAGTGGTGTCTCATTTTCTAGCAACCAGCAGCATGCACAATCTAGCACTAACATGTCGGATTCTGTTGCACAGGATGTTAGTAAATTGTCATCTGTGTCAAGTATCCCACATTCTGTCCCTGTTCATACTTCTACATCCATAATGCCTCCACCCTCTGACCCTAATTATCGCCCAGCTACTTCATGGATGCCAACTGCCCTGTCTTTTCCTGTGCATCCTGTAATGCCTACTCCAGGGAATCCTGGCCCTCCTGGATTAGCATCATCTGCGATAATATCCTCCAATCCTGCTGCTCCATCCACAGGCACAGATTCTTCTCCAGCTGCATTACTGAGACCAAATATGCCAACTCCAGTCATTGCATCAGATCCTACTGCCCCTCAGAAAGGCTTTCCCTATCCATCCATGCCTGCCATGGCTGCTCCGCCTCAGGGACTTTGGTTACAGCCCCCACAGATGAGTGGTGTACTTAGGCCACCATATCTTCAATACCCTGCTCCTTTTCCTGGTCCCTTTCCATTTCCAACACGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGGGTGCTGGTGGTGGCACTTCTACACCTTCTGCTTCCAGTCATCAGCTGAGGGGAACAACTGCTTTGCAAATGGAAGTTATTTCAGGGCCTGCTGATGATAAGAAGAAATTAAATGCTTTTGACAGTCTGAATGAGGATGCTGCTAATAATGATCAATTAGATGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCTGTGACAGGAGAATCAACATATGATAAACCTGCTGGCTTTAAAGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCTATGACGGATTTGCCTGGTACTGATTGGCGGTTGGTCTCCACTAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTATAAAAGATCATTTAATGTCAGTTCCAAATACTCATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTCTACAGAACTCATCATCAGCGTTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTGCTTCCCCTTCTATTCCTGCGCCATCAGTACAAACAGGACCTGAATCAAATGGTTCAAAAACAGTTGATTCTACAGCTAAGGGCCTGCAAGTAGATAATAACAAGGATAAACAAAAAGATACTAATGGTGATGCTAACGTCTCTGATACATCCTCAGATTCTGAAGATGAAGATAATGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGAGATGCTTAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTTTGTTAAAACTCGTGCAGAAGAAGAACGTAAAGAAAAACGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCGGTTACTGGATGAAGCCTCAGAGGATATTAATCACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAACGATCCACGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCACCTATTGAATGAAAGAGTGCTTCCTTTTAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCTTCCAGTTTTAAGTCAATGCTTAAAGAGCGAGAAGATATATCTTTTAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCCGAATTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGGGAGCTGCGCAAAAGAAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGATCCCTCTGGCATCATGGACGGAATCTAA | 2502 | 0.4492 | MASPAWLPQEAQPPVSGETPLSMASSTPNSAPATPSTVPAPPFAYGALQNINASGNSQQSSTHPVIKSNSAANPMVVQPPVPSVSSHPPPSFSYNIPQSGVSFSSNQQHAQSSTNMSDSVAQDVSKLSSVSSIPHSVPVHTSTSIMPPPSDPNYRPATSWMPTALSFPVHPVMPTPGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTPVIASDPTAPQKGFPYPSMPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPTRGVALPAVPIPDSQPPGVTPVGAGGGTSTPSASSHQLRGTTALQMEVISGPADDKKKLNAFDSLNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGEPHQVSAQPTPVSMTDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVIKDHLMSVPNTHVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSSSALDLIKKKLQDSGTPVASPSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKQKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHFVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINHNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPFKKAAEEKAQAMRAAAASSFKSMLKEREDISFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPSGIMDGI | 833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo11g01969 | 833 | Pfam | WW domain | 350 | 376 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | ProSiteProfiles | FF domain profile. | 637 | 692 | IPR002713 | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 88 | 148 | - | - | |
| Pumo11g01969 | 833 | ProSiteProfiles | FF domain profile. | 705 | 759 | IPR002713 | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 1 | 157 | - | - | |
| Pumo11g01969 | 833 | CDD | WW | 401 | 430 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | FunFam | Pre-mRNA-processing protein 40C | 345 | 388 | - | - | |
| Pumo11g01969 | 833 | ProSitePatterns | WW/rsp5/WWP domain signature. | 403 | 428 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | Gene3D | - | 347 | 387 | - | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 185 | 207 | - | - | |
| Pumo11g01969 | 833 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 345 | 378 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | CDD | WW | 351 | 376 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | Gene3D | FF domain | 633 | 693 | IPR036517 | - | |
| Pumo11g01969 | 833 | Gene3D | FF domain | 556 | 632 | IPR036517 | - | |
| Pumo11g01969 | 833 | Gene3D | FF domain | 694 | 773 | IPR036517 | - | |
| Pumo11g01969 | 833 | Pfam | FF domain | 576 | 621 | IPR002713 | - | |
| Pumo11g01969 | 833 | Pfam | FF domain | 709 | 756 | IPR002713 | - | |
| Pumo11g01969 | 833 | Pfam | FF domain | 640 | 687 | IPR002713 | - | |
| Pumo11g01969 | 833 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 555 | 632 | - | - | |
| Pumo11g01969 | 833 | SMART | ww_5 | 346 | 378 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | SMART | ww_5 | 398 | 430 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | ProSitePatterns | WW/rsp5/WWP domain signature. | 351 | 376 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 49 | 80 | - | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 766 | 800 | - | - | |
| Pumo11g01969 | 833 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 403 | 430 | IPR001202 | GO:0005515 | |
| Pumo11g01969 | 833 | ProSiteProfiles | FF domain profile. | 570 | 624 | IPR002713 | - | |
| Pumo11g01969 | 833 | FunFam | Pre-mRNA-processing protein 40C isoform C | 633 | 696 | - | - | |
| Pumo11g01969 | 833 | SUPERFAMILY | FF domain | 629 | 697 | IPR036517 | - | |
| Pumo11g01969 | 833 | FunFam | Pre-mRNA-processing protein 40C | 697 | 771 | - | - | |
| Pumo11g01969 | 833 | Coils | Coil | 757 | 812 | - | - | |
| Pumo11g01969 | 833 | SUPERFAMILY | FF domain | 565 | 630 | IPR036517 | - | |
| Pumo11g01969 | 833 | SUPERFAMILY | WW domain | 350 | 380 | IPR036020 | GO:0005515 | |
| Pumo11g01969 | 833 | SUPERFAMILY | FF domain | 700 | 763 | IPR036517 | - | |
| Pumo11g01969 | 833 | SUPERFAMILY | WW domain | 402 | 434 | IPR036020 | GO:0005515 | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 504 | 536 | - | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 176 | 207 | - | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 285 | 312 | - | - | |
| Pumo11g01969 | 833 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 57 | 827 | IPR045148 | GO:0003712|GO:0070063 | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 298 | 312 | - | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 501 | 569 | - | - | |
| Pumo11g01969 | 833 | Gene3D | - | 388 | 444 | - | - | |
| Pumo11g01969 | 833 | SMART | FF_2 | 705 | 759 | IPR002713 | - | |
| Pumo11g01969 | 833 | SMART | FF_2 | 637 | 696 | IPR002713 | - | |
| Pumo11g01969 | 833 | SMART | FF_2 | 570 | 624 | IPR002713 | - | |
| Pumo11g01969 | 833 | MobiDBLite | consensus disorder prediction | 15 | 33 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo11g01969 | K12824 | - | gmx:100816454 | 1318.91 |