Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01956 ATGCCGAAGCCTTGTGACTTGCAAATCAACATTGATGGTCAGCAGATATTTCTTTTGAAAGAGAGGGTTATATCAAAATACTGTGGAGGGTTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCATGTGAAGGAGTTGGGAATTAGAATCAATGATTTCCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAGCAATGGCAAAATCCAAATCACTGTAGCTAATGTGTCTCTCCTCCACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGCATTCAGCAACAATCTCTTGCAACAAACAGAAACTTTTATTGAGAGAATCTATTACTGGAAGTGGAATGACATACTTGTAAGTCTCAAGAGTTGCCAGCTGTTTTATACATTTGCAGATGGCTATGGTCTCTTGGAGAGGATCATTAGTGTCTTAGCAAAGTTTGTCCAGAATTCAGATTCAAACCTCCTCACTTCCTCGCCTTCGGCATCATCATCATCATCTTCACCAGAAAGCAGTTTTGCTAAGAGATTCTCTTTTTCATCCAAGAAAACTACCCCAGAAAAAATCAAGTCAAGTTTGCCACGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTACCACCAAAGATCATTGAGAAACTCTTCCAGACTATTGGAGCATACAAAGCTGATAACAAAGATTTAATCCTCACAAGATTTCTGTTGCATTATCTGAAAATAGCTTCTCAAACCGAAGTGGTTAATTGCAGAAACAGCAATGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGGATCATATCTGTTGGTAAAGAGACCTTTTCTTGCAGAGGCCTTTTTTGGGTACTAAGGATTGTATCTAAGTTTGGGTTGAGTAGAGACTGCAGAACTGAATTGGAGAAAATGATTGGTGGAATGCTTGAGCAAGCTACACTGGATGATCTTCTAGTCTCTGGGCATGACATGGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGTTAGACTATTTGTTGATATCAATGGTTCTGATGGACTGTCTTTACAGAAACTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTAGCAGAATGCTTGCCAGACTCTGCAAGGGATTGCTATGATGGGGTCTACAAAGCCATTGACATCTATCTTGAGTCTCATCCAACTATCACATTTGAGGAGAGATCGAGATTGTGTAGATGTCTTAATTACAGCAAACTCAGCTTTGAAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAAGGGTTGCAATGCAAGCTCTTATTTCTCAACAACCAAAAATTTCAACAAGTGACTTTGTAACTGAGAGTCCAAGGATGAAGCCTTCCCAAATAGTTTTGTACAATGAAGCCAACAGTGAAAGCTTCTCCCAAGAGAGGAAAGATATGAAACTAAACATAGATAAAATGCAATGGGGAGTAATAGAACTGACGAAATTACGCAAGGAAATGAACGTGTCACAATTGTTTACCCATAATGTCTTGTTTAATCCTGCTCGTGCTTCATCCTCACCAAGATTTTGTTGA 1623 0.3943 MPKPCDLQINIDGQQIFLLKERVISKYCGGLKKILNHQKRRCHVKELGIRINDFPGGPEGFELVSRFCYSNGKIQITVANVSLLHCCAVYLGMTEEAFSNNLLQQTETFIERIYYWKWNDILVSLKSCQLFYTFADGYGLLERIISVLAKFVQNSDSNLLTSSPSASSSSSSPESSFAKRFSFSSKKTTPEKIKSSLPRKAWWFDDLATLPPKIIEKLFQTIGAYKADNKDLILTRFLLHYLKIASQTEVVNCRNSNEYAALAETAAYGIISVGKETFSCRGLFWVLRIVSKFGLSRDCRTELEKMIGGMLEQATLDDLLVSGHDMGVYYDVNLVIRLVRLFVDINGSDGLSLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLESHPTITFEERSRLCRCLNYSKLSFEASKDLAKNPRIPPRVAMQALISQQPKISTSDFVTESPRMKPSQIVLYNEANSESFSQERKDMKLNIDKMQWGVIELTKLRKEMNVSQLFTHNVLFNPARASSSPRFC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01956 540 Pfam NPH3 family 202 435 IPR027356 -
Pumo11g01956 540 SUPERFAMILY POZ domain 3 95 IPR011333 -
Pumo11g01956 540 ProSiteProfiles NPH3 domain profile. 201 459 IPR027356 -
Pumo11g01956 540 PANTHER OS12G0117600 PROTEIN 4 511 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01956 Pumo-Chr11 51445012 51448130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01956 6 463 EF-hand Containing Proteins AT3G44820 27.400 8.38e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01956 - - gmx:100808259 985.711