Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01941 ATGCCAATGCCATCTCCCTCATTCCCAACCTTCAAATCCCATCACAACCTCTGCATCGTCAAGCCCCTCCTCTCCAATTCTTCCCTCTCCGAAGCCGTTTCTTCTCTCGACCTATTACGCCTCAAGGGCATTCGCTTACCCTCTCACATTCTCGCCACCCTTTTGCGCCACTGCTCCAAAACCAGGTCTTACCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTAACCGGTTTCAAACGCCCCCCAACGCTTCTAGCCAACCACTTGATCTCCATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCAAGGTGTTCGACAAAATGGAGGATAGAAATTTGTACACTTGGAACAATATGCTCTCTGGGTATGCTAAATTGGGCTTGATGAAGCAAGCTAGGAGCTTCTTCTACCGAATGCCTCACAAGGATCATGTATCTTGGAATTCGATGGTGGTTGGGTATGCACACAGGGGCAGATTTGCCGAGGCTTTGAGATTTTATCAACAGTTTAGGAGATTGTCTGTGGGGTATAATGAGTTTAGCTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATTCATGGGCAGGTTTTAGTTGTTGGATTTTCGTCCAATGTAGTTATATCCAGCTTAATTGTTGATGCTTATGCAAAGTGTGGAAAGATGGAAGATGCGAGGAGATTATTTGATGACATGCCTGTGAGGGATGTTCGTGCATGGACAACATTAGTTTCGGGTTATGCCGCGTGGGGGGACATGGAATCGGGTGCTGAGTTGTTTAGTCAGATGCCTAAAAGCAATTCCTGTTCGTGGACATCTTTGATTAGAGGTTATGCAAGCAATGGTATGGGTTATGAAGCACTTGCAGTCTTTAGACAAATGATCAAGCATCAAGTTAGACCTGATCAATTTACATTCAGTACTTGCCTCTTTGCTTGTGCCACTATTGCTTCAGTGAAGCATGGTAGACAAATGCATGCTTTTTTGGTGCAGAATAACATCAAACCTAATACTATTGTCGTTTGTGCTCTTGTTAACATGTATTCGAAATGTGGAAGCTTGGAAACTGCCAGGCAAGTCTTTAATTTCATTGGAAATAAGCAGGATGTAGTGTTGTGGAACACGATGATATTGGCACTGGCTCACTATGGGTATGGTATAGAAGCAATTATGATGCTATATAATATGCTAAAATCAGGAGTGAAGCCAAATAGGGCCACTTTTGTTGGCATTCTAAATGCTTGTTGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTATTCAAGTCCATGACTAGTGAGCATGGTGTCGTCCCTGACCAAGAACACTATACACGCTTGGCTAATCTTTTGGGTCAAGCTGGATGTTTTAATGAATCAGTGAAGGATCTGCAGACGATGGATTGTAAGCCAGGTGACCATGTTTGTAATTCTTCGATTGGTGTATGTAGAATGCATGAGGATATAGATAATGGGACAGAAGTAGCTGCATTCCTTATTAAATTGCAGCCACAATCTTCTGCTGCCTACGAATTACTTTCAAGGACATATGCTGCACTTGGGAAATGGGAATTGGTTGAGAAAATAAGACATATTTTGGATGAGAGACAGGGGAGAAAAAGGCCAGGCTTTTACTTGGATTGA 1674 0.4337 MPMPSPSFPTFKSHHNLCIVKPLLSNSSLSEAVSSLDLLRLKGIRLPSHILATLLRHCSKTRSYREGKLIHLHLKLTGFKRPPTLLANHLISMYFSCGDFVQARKVFDKMEDRNLYTWNNMLSGYAKLGLMKQARSFFYRMPHKDHVSWNSMVVGYAHRGRFAEALRFYQQFRRLSVGYNEFSFASVLIVSVKLKDFELCRQIHGQVLVVGFSSNVVISSLIVDAYAKCGKMEDARRLFDDMPVRDVRAWTTLVSGYAAWGDMESGAELFSQMPKSNSCSWTSLIRGYASNGMGYEALAVFRQMIKHQVRPDQFTFSTCLFACATIASVKHGRQMHAFLVQNNIKPNTIVVCALVNMYSKCGSLETARQVFNFIGNKQDVVLWNTMILALAHYGYGIEAIMMLYNMLKSGVKPNRATFVGILNACCHSGLVQEGLQLFKSMTSEHGVVPDQEHYTRLANLLGQAGCFNESVKDLQTMDCKPGDHVCNSSIGVCRMHEDIDNGTEVAAFLIKLQPQSSAAYELLSRTYAALGKWELVEKIRHILDERQGRKRPGFYLD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01941 557 Pfam PPR repeat 116 144 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat 147 175 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat 220 245 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat 352 372 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat 88 114 IPR002885 -
Pumo11g01941 557 SUPERFAMILY TPR-like 245 533 IPR011990 GO:0005515
Pumo11g01941 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Pumo11g01941 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Pumo11g01941 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Pumo11g01941 557 FunFam Pentatricopeptide repeat-containing protein At2g21090 189 328 - -
Pumo11g01941 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Pumo11g01941 557 FunFam Pentatricopeptide repeat-containing protein At2g21090 19 172 - -
Pumo11g01941 557 Pfam E motif 496 553 IPR046848 -
Pumo11g01941 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 141 IPR046960 GO:0003723|GO:0009451
Pumo11g01941 557 Gene3D Tetratricopeptide repeat domain 330 432 IPR011990 GO:0005515
Pumo11g01941 557 Gene3D Tetratricopeptide repeat domain 245 329 IPR011990 GO:0005515
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 116 146 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 249 279 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 222 247 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 147 176 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 88 115 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 381 414 IPR002885 -
Pumo11g01941 557 NCBIfam pentatricopeptide repeat 280 312 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat family 379 427 IPR002885 -
Pumo11g01941 557 Pfam PPR repeat family 277 324 IPR002885 -
Pumo11g01941 557 SUPERFAMILY TPR-like 93 534 IPR011990 GO:0005515
Pumo11g01941 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Pumo11g01941 557 FunFam Pentatricopeptide repeat-containing protein 377 556 - -
Pumo11g01941 557 Gene3D Tetratricopeptide repeat domain 19 144 IPR011990 GO:0005515
Pumo11g01941 557 Gene3D Tetratricopeptide repeat domain 433 555 IPR011990 GO:0005515
Pumo11g01941 557 Gene3D Tetratricopeptide repeat domain 145 244 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01941 Pumo-Chr11 51326909 51329274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01941 36 553 Glycoside Hydrolase AT3G49170 28.681 8.76e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01941 - - gmx:100798659 1001.12