Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01925 ATGGGTTTCTTCGGTACCATTTTGGGGTTTTTCGGATTTGGGGTTGGGATTTCGGTTGGTCTTGTGGCTGGCTACTTTCTCTTCATCTACTTTCAACCCACCACCAATGTTGAGGATCCTGAAATCAAGCCATTGGTGGACCAAGACCAAGAGACTCTGCAACGAATGTTTCCTGAGATTCCTCTTTGGATAAAAAATCCCGATTTTGATCGGCTTGACTGGCTGAACAAGTTTGTTGAATATATGTGGCCGTATCTTGATAAGGCAATTTGTAAGACTGCGAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATACAAAATTGATTCTGTTGAGTTTGAAACACTCACACTAGGGTCTCTGCCGCCTACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAAGAGTTAATTATGGAGCCTTCTATAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTTTTGCCTCGTATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGCGTCTATAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACTTGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTTCATGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTAAAGCTAAAGCTTACTGAGGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGGTTGTTAAAGATCCAGACTCCCAGGTTTTAGACATTATTGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGTCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTGAAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCACATGTACGTCTTATTTTCAGAGGGGAGGAGAAAAAAACTAAGGTACAGAATCCCAAGAAGTACTTGCATTTTACTTTTTGTTTCTTCTGGATTATCTCGAATAAATAA 1422 0.4023 MGFFGTILGFFGFGVGISVGLVAGYFLFIYFQPTTNVEDPEIKPLVDQDQETLQRMFPEIPLWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSIKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANLYLWPKTLEVQVLDMSKALKRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPDSQVLDIIVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVVELTYKPLKEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKVQNPKKYLHFTFCFFWIISNK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01925 473 ProSiteProfiles C2 domain profile. 241 363 IPR000008 -
Pumo11g01925 473 CDD SMP_SYT 61 249 - -
Pumo11g01925 473 Gene3D C2 domain 257 409 IPR035892 -
Pumo11g01925 473 Pfam C2 domain 261 360 IPR000008 -
Pumo11g01925 473 FunFam Synaptotagmin-2 isoform A 256 410 - -
Pumo11g01925 473 PRINTS C2 domain signature 278 290 IPR000008 -
Pumo11g01925 473 PRINTS C2 domain signature 327 335 IPR000008 -
Pumo11g01925 473 PRINTS C2 domain signature 305 318 IPR000008 -
Pumo11g01925 473 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 68 250 IPR031468 GO:0008289
Pumo11g01925 473 SMART C2_3c 262 362 IPR000008 -
Pumo11g01925 473 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 2 455 IPR045050 GO:0008289
Pumo11g01925 473 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Pumo11g01925 473 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 371 468 IPR035892 -
Pumo11g01925 473 CDD C2 263 365 - -
Pumo11g01925 473 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01925 Pumo-Chr11 51047567 51054474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01925 256 358 Lipid Metabolism Gene Families AT3G61300 37.037 1.56e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01925 - - gmx:100803978 859.751