Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01924 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCTACCACTCGTTCAAGCAAACGTGCACGTCTCTCTTCTTCTTCCTCCGCTTCTGCCGCTGCCGCTGCCGCATCTGTTTCTTCTGTGAACACTCGTTCCCGTGCATCCAGGACTAAGGAACCCTTGCCCCCTAAAAATCCTCCTCCCATGGACTCTGCCAATGAATCGTCTGGCTCCCGCCGCCGTGATCGCCGCAACAAGGACAATTCCGACAAGGGAAAGGAGAAAGAACATGATGTTAGGATTAGGGACAGAGACGCGGACAGAGGGCTGGCGTTGAACATGGATGGTGGCGGAGACGATGATGACAATGACAGTGAAGGCGGTGTGGGGATTTTGCATCCAAATTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCATCCTCGGCTATGGGTTCTGCATCTTCCTCTCACCAGAGTGGGAGATTGAAAAAGATTCTGTTTGGATTGCGGGCAGATGGTGAAGAAGGGCGGCAGGTCGAAGCATTGACACAGCTCTGTGAGATGCTTTCGATTGGGACTGAGGAATCACTTAGTACATTCTCTGTTGATTCGTTTGTTCCTGTGCTTGTGGGGTTGTTGAATCACGAGAGCAACCCAGACATCATGCTTCTTGCTGCCAGAGCATTAACCCATCTCTGCGACGTGCTCCCTTCATCTTGTGCTGCTGTTGTGCATTATGGTGCAGTGTCAATCTTTTGTGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCCCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGAGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAACTTCCTTCAGACGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCGTCATCTCCAGACAAATTAGATGAATTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTACTACTTCTCGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGGGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCACCGGAACAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTGCCCCCATTGCCACAAGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCAATTGTAAAGAAGTCTCCTGCTGGTAGCTCTGGGAAACAAGAAGACACGAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAACTATTAAATGATCAACCTGAACTACTTAAGCAATTTGCGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAACATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACTAATATATCAAGTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTACCCGAAAATTCAAACAATATCTCTACACAGGCATCTTCTGCTGAGAAGGACAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCAGCGACGCAGTGGGAATTCCAATCCTGATGGAAATCCTTTGGACGATTTGAAGGCTCCAGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGTGGATATGCCAACAGTAAATTCCAGTATTCGGTTATCTGTTAGTACAGCTGCCAAAGCTTTTAAAGATAAGTACTTTCCTTCAGATCCTGGGGCTACTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCTGATGAACAAAGGACTAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAAGAGTATTTAATTGGGATCATAGCTGACATGCTAAAGGAACTTGGCAAAGGCGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGGAGCTCTGTTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGGCCATTAGAAACCCACCTTCCCAAGCTTCGCCAACAAGCACTTAAAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCTACTGAAGATGGGACTCTGGCTCCTATGACTGTCTTAGTCCAGAAGCTTCAAAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCCTTCAAGTTGCGACTTTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGGAATTCTGAATCTGGGAAAACTCCTGTAGGAGCTGGTGTATCCTCTCCTGCCACTACCCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACATCTAGAAAGGAAATAACTCAAGATAAAAGCACAAGCTCTTCCAAGGGTAAGGGGAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGACGACCTCAGACCAGGAATACTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAATAAAGCCTGTAAACGGGGACTCTACTTCTGAGGATGAAGATTTGGATATATCCCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGATGTACTGAGGGATGATTCTCTTCCTGTTTGTTCACCTGACAAAGTACATGATGTGAAATTGGGTGACTTAGCGGAGGAGAGTAATGTTGCTCCTGCAACAAGTGATGGCCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGTCAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACTTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGATGATATTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAAGCAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTAGTGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCAGACAGATAGGACTCCCCCTGGAGGTTCAACTTCTAATGCTTCAAAATCTGGCAAATCTGGGTCTGTATCGAATTCTAGTTCTGAAGCCAAGCTACATCAGACATCTGTATTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTGCTTGAGGGTTTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGGTTACTGATAGCTTTGCAGAGGGAAAAATTTTGGATTTAGATGAGCTAAGTGTTACCAGCGTAGCTAGGGTTCCTACAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGCAGTGGGAGTCTTCCCTCATGGTGCTACCAGTTAACTAAAGCGTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTACTTTTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCAGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACCGGTCTGGGTCCCACCCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCAGGTTCTTCAGAGAAATATCAAATGGAAATTGATGTAGATGAAAAGAAGATGAAAAGTAGTGAAGGCTCTTTGGTTGGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAATTTTTTAAAGTGATTGAATATTTCCGGCTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCCTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAACGTTATATACAATCTATTGGTGGTAGTAGCTATATCGATACCATTGCTAATTTGCATTTTCGTGGGGCCCCAATAGAAGATCTGTGCTTGGATTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAATCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACTGTTAAGACTGGAATCATTCGTCAAATTGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGTAGAGAATTGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTTGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAATGGGAATGGGCCTTCAGAATCAGCGGATGACGACTTGCCAAGTGTGATGACATGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAATGAAGGCCAAGGATCCTTTGATTTATCATGA 5637 0.444 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAAAAASVSSVNTRSRASRTKEPLPPKNPPPMDSANESSGSRRRDRRNKDNSDKGKEKEHDVRIRDRDADRGLALNMDGGGDDDDNDSEGGVGILHPNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIISNMFLKGPIVKKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGTLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILPENSNNISTQASSAEKDNDSISGASSRSRRYQRRSGNSNPDGNPLDDLKAPVSVNVGSPPSSVDMPTVNSSIRLSVSTAAKAFKDKYFPSDPGATEVGITDDLLHLKNLCMKLNAGADEQRTNGKGKSKTSGFGLEEYLIGIIADMLKELGKGDGVSTFEFIGSGVVGALLNYFSCGYFSKDRPLETHLPKLRQQALKRFKLFIAVALPSTEDGTLAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFLWPRIQRSESGQKSTVPAGNSESGKTPVGAGVSSPATTRRHSTRSRSSVNIGDTSRKEITQDKSTSSSKGKGKAVLKPAQEEARRPQTRNTTRRRAALDKDAQIKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDKVHDVKLGDLAEESNVAPATSDGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLFGSSNDPPKMIFTAGGKQLNRHLTIYQAIQKQLVLDEDDDERFAGSSDYVSSDGSRLWGDIYTITYQRAENQTDRTPPGGSTSNASKSGKSGSVSNSSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKILDLDELSVTSVARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSGSSEKYQMEIDVDEKKMKSSEGSLVGDGELVQAPLGLFPRPWPANADASEGTQFFKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKRYIQSIGGSSYIDTIANLHFRGAPIEDLCLDFTLPGYPEYILKSGDEIVDINNLEEYISMVVEATVKTGIIRQIEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1 133 - -
Pumo11g01924 1878 Gene3D - 530 658 IPR011989 -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 951 1103 - -
Pumo11g01924 1878 SUPERFAMILY ARM repeat 178 652 IPR016024 -
Pumo11g01924 1878 CDD HECTc 1456 1873 IPR000569 GO:0004842
Pumo11g01924 1878 FunFam HECT ubiquitin protein ligase family protein KAK 171 485 - -
Pumo11g01924 1878 SMART hect_3 1467 1878 IPR000569 GO:0004842
Pumo11g01924 1878 SMART arm_5 209 250 IPR000225 GO:0005515
Pumo11g01924 1878 SMART arm_5 335 373 IPR000225 GO:0005515
Pumo11g01924 1878 SMART arm_5 292 332 IPR000225 GO:0005515
Pumo11g01924 1878 Gene3D Hect, E3 ligase catalytic domains 1396 1639 - -
Pumo11g01924 1878 FunFam E3 ubiquitin-protein ligase UPL3 1397 1638 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1173 1196 - -
Pumo11g01924 1878 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1747 1877 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 651 686 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 10 59 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1018 1044 - -
Pumo11g01924 1878 SUPERFAMILY Hect, E3 ligase catalytic domain 1448 1871 IPR035983 GO:0004842
Pumo11g01924 1878 ProSiteProfiles HECT domain profile. 1577 1878 IPR000569 GO:0004842
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1056 1090 - -
Pumo11g01924 1878 Gene3D - 167 485 IPR011989 -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 951 998 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1117 1151 - -
Pumo11g01924 1878 Pfam HECT-domain (ubiquitin-transferase) 1504 1878 IPR000569 GO:0004842
Pumo11g01924 1878 Gene3D Hect, E3 ligase catalytic domain 1750 1876 - -
Pumo11g01924 1878 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1878 IPR045322 GO:0006511|GO:0061630
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1257 1290 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 1119 1151 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 651 708 - -
Pumo11g01924 1878 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01924 Pumo-Chr11 51024734 51034850 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01924 K10590 - gmx:100783336 3244.14