Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01923 ATGACAAAGAAAAAAATCCAAAACGGGAAACCGAGCTTTGCTCTAATTAAGACCTTAAATACACATGTGTTACCTGTCTCCTACGTTAGTGTCACTCATGGAATTGCGGAAACAGTTTCTGAGCATCTAAGAATTGGATCAAATCACACTTTACCCTCTTTCTCTCCATTCTTCACATACATTCCCAACATGTCAATTCTCAAAGTTCTTTTGATTACCATCACTGTTTCATTGGCCATTGCTGCCATCGCCGTTGAAGCCGAGATTATGACTTCTAACAGCGCTGACGGAGACTTAGTCGGCGAGAAGAAGACTGTGACTTATGATGGCAGGTCACTCATTATCAATGGAAGACGGGAGCTTCTCTTCTCCGGTTCCATCCATTACCCACGAAGCACCCCCGAGACGTGGTCAGACATTCTTGACAGAGCAAAACACGGAGGTATAAACGTGGTCCAAACTTACGTGTTCTGGAACATTCACGAGCCTGAGAAAGGCAAGTTCAAAATTGACCCGCAGTATGATTACATAAAGTTCATGAAGCTCATTCAAGAGAAAGATATGTATATAACCCTCAGGCTTGGGCCTTTCATCCAAGCTGAATGGAATCATGGAGGACTTCCATATTGGCTAAGAGAGGTCCCTGAAATCATATTCCGCTCTAACAATGATCCCTTCAAGAAGCACATGAAAGAATATGTATCAACTGTTATAGATACGTTGAAAGAGGCGAAGCTCTTTGCTCCCCAAGGAGGCCCCATTATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTTAGAGAGGAAGGAGATAATTATGTCCAATGGGCCGCAAAAATGGCAGTGTCACTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAGACAGATGCTCCTGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTGCCCTATGGACTGAAAACTGGACTGCTCAGTATAGAGTGTTTGGAGATCCACCATCCCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGCTTCTTCTCTAAGAATGGGTCATTGGTCAACTACTATATGTACCATGGTGGAACAAATTTTGGTAGAACAACCTCTGCCTTCACTACAACCCGATATTACGATGAAGCCCCTCTTGATGAGTATGGTCTGCAGAGAGAACCAAAATGGAGTCACCTGAGGGATGTGCACAAGGCATTGCACCTATGCAGGAAGGCCCTGTTCTCTGGTGCAACTACCGTCACAAAACTGAGCCAACATCATGAGACTATAGTTTTTGAGAAGCCAGGAAGTGATTTATGTGCTGCTTTCATCACCAACAACCACACCAAAACACCAACAACCATAAAATTCAGAGGTAAAGACTACTATCTGCCACCACGTTCCATTAGCATCCTCCCTGACTGCAAGACTGTGGTCTTCAACACTCAACATATTGCTTCACAGCATAATTCAAGGAACTTCGAGAGTGTGGAATTGGGTCCAGAAGACTTGCCAAAGAAGAATGAGATATCCCCCGTTCTTCGAATTATGAGTCTTGGCCATTCATTGCTTGCCTTTGTAAATGGAGAATTCATTGGATCAAATCATGGTACCCATGAAGAGAAAGGTTTTGAATTCCAGAAACCTGTAACCTTCAAGGTTGGAGTTAACCAGATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCCAAGTCTATACTCATCCTTGGTCTCAACTCTGGAAAAATCGATCTCACTTCTAATGGTTGGGGTCATAAGGTTGGTGTCCAAGGTGAGGAGCTTGGCCTTTTCACTGAGGAGGGATCAAAGAAAGTACAATGGAAAGACGCCAAGGGACCTGGACGGGCTCTCTCCTGGTACAAGACAAATTTTGCAACCCCAGAGGGTAAGGATCCTGTTGCCATCAGGATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGTAAAAGCATTGGTCGTCACTGGATGAGTTACCTCTCTCCTCTTGGAAGTCCTACTCAGTCAGAGTACCACATCCCAAGAACTTACCTCAATCCAAAAGACAACTTGCTTGTCGTATTTGAGGAAGAGGAAGCAAATCCAGAAAAGGTTGAAATCCTTACTATTAACAGAGATACAGTATGCAGTTTCATCACAGAGAATCACCCCCCAAATGTCAACTCATGGGCAATTAAGAGCGAGAAGTTCCAGGCTGTTGTGAAAAATCCGGCGCCAGTAGCTACACTAAGATGTCCACACCGCAGAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTGAGGGTGTCTGTGGAGCCTATACTTTAGGCAAATGCAATGCACCTTCCACCAAACAAATTGTTGAGCAGTATTGCCTAGGAAGACCATCTTGTGCGGTTCCAATGGACAAGGCAACCTTCACTGAGGGCCAAGATGCTTGCCCAGATGTGATGAAGGCACTTGCAATCCAAGTGAAGTGTGCCTCCTAG 2571 0.452 MTKKKIQNGKPSFALIKTLNTHVLPVSYVSVTHGIAETVSEHLRIGSNHTLPSFSPFFTYIPNMSILKVLLITITVSLAIAAIAVEAEIMTSNSADGDLVGEKKTVTYDGRSLIINGRRELLFSGSIHYPRSTPETWSDILDRAKHGGINVVQTYVFWNIHEPEKGKFKIDPQYDYIKFMKLIQEKDMYITLRLGPFIQAEWNHGGLPYWLREVPEIIFRSNNDPFKKHMKEYVSTVIDTLKEAKLFAPQGGPIILAQIENEYNHIQRAFREEGDNYVQWAAKMAVSLDVGVPWIMCKQTDAPDPVINACNGRHCGDTFAGPNKPYKPALWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTTSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKALHLCRKALFSGATTVTKLSQHHETIVFEKPGSDLCAAFITNNHTKTPTTIKFRGKDYYLPPRSISILPDCKTVVFNTQHIASQHNSRNFESVELGPEDLPKKNEISPVLRIMSLGHSLLAFVNGEFIGSNHGTHEEKGFEFQKPVTFKVGVNQIAILACTVGLPDSGAYMEHRFAGPKSILILGLNSGKIDLTSNGWGHKVGVQGEELGLFTEEGSKKVQWKDAKGPGRALSWYKTNFATPEGKDPVAIRMTGMGKGMIWINGKSIGRHWMSYLSPLGSPTQSEYHIPRTYLNPKDNLLVVFEEEEANPEKVEILTINRDTVCSFITENHPPNVNSWAIKSEKFQAVVKNPAPVATLRCPHRRTIKAVEFASFGDPEGVCGAYTLGKCNAPSTKQIVEQYCLGRPSCAVPMDKATFTEGQDACPDVMKALAIQVKCAS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01923 856 SUPERFAMILY (Trans)glycosidases 105 422 IPR017853 -
Pumo11g01923 856 Pfam Beta-sandwich domain in beta galactosidase 426 498 IPR041392 -
Pumo11g01923 856 SUPERFAMILY Galactose-binding domain-like 482 594 IPR008979 -
Pumo11g01923 856 SUPERFAMILY Galactose-binding domain-like 613 757 IPR008979 -
Pumo11g01923 856 Gene3D Glycosidases 102 422 - -
Pumo11g01923 856 FunFam Beta-galactosidase 102 422 - -
Pumo11g01923 856 Gene3D - 758 856 IPR043159 -
Pumo11g01923 856 FunFam Beta-galactosidase 617 741 - -
Pumo11g01923 856 Pfam Glycosyl hydrolases family 35 112 418 IPR031330 -
Pumo11g01923 856 ProSiteProfiles SUEL-type lectin domain profile. 767 855 IPR000922 GO:0030246
Pumo11g01923 856 PANTHER BETA-GALACTOSIDASE RELATED 92 763 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 CDD Gal_Rha_Lectin_BGal 763 854 - -
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 367 382 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 137 155 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 674 690 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 192 211 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 647 661 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 386 402 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 330 345 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 PRINTS Glycosyl hydrolase family 35 signature 116 133 IPR001944 GO:0004553|GO:0005975
Pumo11g01923 856 Pfam Beta-galactosidase jelly roll domain 637 720 IPR025300 -
Pumo11g01923 856 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 251 263 IPR019801 GO:0004553|GO:0005975
Pumo11g01923 856 Gene3D - 618 743 - -
Pumo11g01923 856 Pfam Galactose binding lectin domain 775 854 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01923 Pumo-Chr11 51017332 51022537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01923 106 855 Glycoside Hydrolase AT2G16730 57.750 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01923 - - gmx:100780092 1409.82