Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01914 ATGGCGGAAGAGTACGAGGAGGAGGGTGGTGAGGTTGAAGAAGAGTTCTCGGTTTGGAAGAAGAACACTCCTTTGTTGTACGATTTCTTCATTTCTCACCCTCTTCAATGGCCTTCTCTCACCGTTGACTGGGTTCCTTCCTCTCCCCAACCTCACTCCCACTCTTCCTTCAATCTCCACAAACTCCTCCTCGCCACTCACACTTCCCAAGGCGAACCCAACTTCCTCATGCTCGCCGACGCATCCCTCCTCGCCGACACCTCACAACCCATTGTCGCCACCGATCCAAACAACCCCGTTCTTCCCAAGGTGGAGGTTTCCCAAAGGATTCCTGTTGATGGGGAGGTGAATCGAGCGCGTTGTATGCTGCAGAATCCTAGTATTGTTGCTGCTAAGACTTGTAATTCAGAGGTTTATGTGTTTGATTTCACCAAGCAACATGGGAGTGAGTGTGACCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGTTATGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTATCTTTTGAGTGGTTCGCATGACCATAAGGTTTGCTTGTGGGATGTGCCTGCTGCTTCTCAAGAGAAGGTGCTTGATGCGCTTCATGTTTATGAGGGTCATGAGAATGTGGTTGAAGATGTGTCCTGGAATTTGAAGGATGAGAATTTGTTTGGGTCTGTTGGAGATGACTGCAAATTGATCATTTGGGACTTGCGGACGAACAAACCCCAACAATCAGTCAAACCACATGAAAAGGAGGTGAACTTTCTTTCTTTCAATCCATATAATGAATGGATTTTGGCTACAGCATCTTCAGATACAACTGTCGGTCTCTTTGATACACGGAAGCTGTCGGTGCCGCTACATGTTTTAAGTAGCCACACAGATGAAGTATTCCAGGTAGAGTGGGATCCTAATCATGATGCTGTGTTGGCATCTTCTGGTGCTGACAGAAGGCTGATGGTTTGGGACCTTAACAGAGTTGGTGATGAGCAGATAGAGGGAGATGGTGAAAGTGGCCCTCCTGAACTACTCTTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGCAAATGGCAGAGAGCATTTACAATGACGGAGATGATGATAACATGTGGACGGCCGATGATTAG 1209 0.4698 MAEEYEEEGGEVEEEFSVWKKNTPLLYDFFISHPLQWPSLTVDWVPSSPQPHSHSSFNLHKLLLATHTSQGEPNFLMLADASLLADTSQPIVATDPNNPVLPKVEVSQRIPVDGEVNRARCMLQNPSIVAAKTCNSEVYVFDFTKQHGSECDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPAASQEKVLDALHVYEGHENVVEDVSWNLKDENLFGSVGDDCKLIIWDLRTNKPQQSVKPHEKEVNFLSFNPYNEWILATASSDTTVGLFDTRKLSVPLHVLSSHTDEVFQVEWDPNHDAVLASSGADRRLMVWDLNRVGDEQIEGDGESGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTADD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01914 402 PRINTS G protein beta WD-40 repeat signature 177 191 IPR020472 -
Pumo11g01914 402 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Pumo11g01914 402 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Pumo11g01914 402 Pfam WD domain, G-beta repeat 289 326 IPR001680 GO:0005515
Pumo11g01914 402 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Pumo11g01914 402 Pfam WD domain, G-beta repeat 347 382 IPR001680 GO:0005515
Pumo11g01914 402 Pfam WD domain, G-beta repeat 157 190 IPR001680 GO:0005515
Pumo11g01914 402 Pfam WD domain, G-beta repeat 203 239 IPR001680 GO:0005515
Pumo11g01914 402 SMART WD40_4 286 326 IPR001680 GO:0005515
Pumo11g01914 402 SMART WD40_4 199 239 IPR001680 GO:0005515
Pumo11g01914 402 SMART WD40_4 343 383 IPR001680 GO:0005515
Pumo11g01914 402 SMART WD40_4 150 190 IPR001680 GO:0005515
Pumo11g01914 402 SMART WD40_4 242 282 IPR001680 GO:0005515
Pumo11g01914 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 199 IPR001680 GO:0005515
Pumo11g01914 402 PANTHER WD40 REPEAT FAMILY 7 395 - -
Pumo11g01914 402 SUPERFAMILY WD40 repeat-like 108 384 IPR036322 GO:0005515
Pumo11g01914 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Pumo11g01914 402 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Pumo11g01914 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 328 - -
Pumo11g01914 402 Gene3D - 1 399 IPR015943 GO:0005515
Pumo11g01914 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 328 IPR001680 GO:0005515
Pumo11g01914 402 ProSitePatterns Trp-Asp (WD) repeats signature. 177 191 IPR019775 -
Pumo11g01914 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 191 - -
Pumo11g01914 402 FunFam WD-40 repeat-containing protein MSI1 1 401 - -
Pumo11g01914 402 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01914 Pumo-Chr11 50924353 50926693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01914 203 385 Miscellaneous Gene Families AT5G08390 20.219 5.39e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01914 K10752 - gmx:100791834 769.615