Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01912 ATGGCCATTCAAGCTCAGTGGTATCCAAATAATTCTGCTTCTCCGTTTTGCAACAATGGTTATTGTGCTGGTGGGCTTATTGAATCTCATATCAATTTTCAACCGAAAAATCATCATCAACAACAACAGCATCAGCAGCTATCAGAACAGCATTTGAGAGAGTTACATAATGGGAGTCAAGGAATTGTTGATCCAAATCTTCATGTTTATAATTCAAAGGCCGTGAATTCTCCTATGTTTGCTATTCAGCTTGAGAAGCAATGGGAAGAGATTGATCAGTACATCAAATCCGAGGATGAGAAATTGAGATATATGCTACGAGAGCATGGGAAGCAACAAGTGATAGCATTGTTGAAAAAATTGGAATCTCGTTCAGTTGATGTCTTGAGGAAAAAAGATGAAGAAATTGCGCAAGCTATAAAGAAAAGGGTAGAGTTGGAAGAGTATTTAAGAAAGCTAGAGGCAGAAAATATGAAGTGGCAGAAAGTGGCTCAAGAGAAGGAAACAATGGCATTGTCCCTCTATAAAACATTGGAGGAAATGACAGAAGGTGGCAATTTTTTGAACAATGGGGTGGTGGCAAATGATGCAGTGTCCTTTTGTGGCGAAACTGGGGGAAAAGAAGAAGAAGAAGCAACAGCAGAAAAAAAACGTATAGAATGTTGTGGGGTGAGTGAGTTTGAACAGAATACTAGAGGAGGAGGAGTAATGGTTTGTAAAAGCTGTCATTCTAGGAGCTCGAGCTTTCTGTTTCTCCCATGCAGGCACCTTTCTTCCTGCAAAGTTTGCAACGCATTCCTCGAGGCTTGCCCCGTTTGCAGAACACCAAAGAAGGCTACCATTGAGTTGAGACTTTGA 858 0.4068 MAIQAQWYPNNSASPFCNNGYCAGGLIESHINFQPKNHHQQQQHQQLSEQHLRELHNGSQGIVDPNLHVYNSKAVNSPMFAIQLEKQWEEIDQYIKSEDEKLRYMLREHGKQQVIALLKKLESRSVDVLRKKDEEIAQAIKKRVELEEYLRKLEAENMKWQKVAQEKETMALSLYKTLEEMTEGGNFLNNGVVANDAVSFCGETGGKEEEEATAEKKRIECCGVSEFEQNTRGGGVMVCKSCHSRSSSFLFLPCRHLSSCKVCNAFLEACPVCRTPKKATIELRL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01912 285 ProSiteProfiles Zinc finger RING-type profile. 239 274 IPR001841 -
Pumo11g01912 285 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 52 282 IPR017066 -
Pumo11g01912 285 Coils Coil 129 170 - -
Pumo11g01912 285 Gene3D - 248 281 - -
Pumo11g01912 285 SUPERFAMILY RING/U-box 236 278 - -
Pumo11g01912 285 PIRSF SBP1_RNase_bind 21 285 IPR017066 -
Pumo11g01912 285 Gene3D Death Domain, Fas 120 247 IPR011029 -
Pumo11g01912 285 FunFam Baculoviral IAP repeat containing 7 248 283 - -
Pumo11g01912 285 Pfam Zinc finger, C3HC4 type (RING finger) 238 278 - -
Pumo11g01912 285 Gene3D - 78 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01912 Pumo-Chr11 50907602 50909371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01912 238 275 Miscellaneous Gene Families AT2G21380 42.105 4.06e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01912 K19042 - gmx:100789863 482.256