Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01909 ATGAGCAAGAAGTCGTGTCCCTGGTTGCTCAAAACAAGCTACTACCTCCTCTCCTCTCCTCTCCTTTCTGCTAATGTTTCAACACTAGTAGTAAATGCTAATCCACTCCCTTTCTTCTCTTCCTCTTTCTCTTTCTCTTCTCTTCTCTCTTCATCCATGGATGTTAACCTCTCTCTCAACCACCACCGCGCCCTCACACTAACCTCCCGCACTCCCTCCCTCTCCACTCTCCGCACACACTTCCTCGGTTCCACCCACACTCTCCGTCCTCCTCCCACGCCACCCTCCCTCCGCTCCCGAAACAAACGCCACAACAACAACAACTTCGGTCTCCTCCGCTTCCACTCCCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCCCACTCCGTCATCGTCGTCATCATCGTCGTTACTCTATCCGCAGTTTCCCTCCTCCACTTCACTCTCAACAAGAAAAAAAATAAGACTCTTAACCAGAGACGGGGACATGCAAAATTTGCATTATCACCGCAAGGAACTAATGTCGGGAACCGGGCCATTGATAGGGAGATTGTTGGTTTTACAGAATTTCAAAGGGATAGCACACTGACTGAGATTGGGAAGTTAAAGGATCATCATGGGGAAGATTACCGTGTCTTTGAGAAAAACGAGATCCATCTTCCGTTTTTGAAATCTTCAGTGGTGCAAGAAGTGGCCGTCGCCACCGAGACTTCCGAGTCATCTTCTTCTGTTATTGACTCTGGTGTCAATAATAATAATGGTTCCAAGGTATTGGATGAGTCTTTTTTATCTGTGGCTTTCTCACCAAGTTCATTACAGCCTCTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAGTTGACTCTGATAATGAGTTGCCTTTGAATATGGTCAAATCTGAGCATACTGCTTCTTCCCTTTCCATAAACAATGCACTGACAACAGTCGACGAACATGCTAAAGAAAAAATTGAACTTGGTGCTATCGATGACGATGTCCTTTTCGGTGAATCAGCCAGGGAAGGGCTGTACATGTTTTATAAGGTTAACAAGTCTGCGACCGGATCCATGACACCACTTAGTAGTTTAAAGTCATTATCTCCCCGTGCTTCTTTTATGAATAAAAAAGGATTGCCCTCAGTGATGGGAAATGGCGCACTAAAAGGATCAGGGTTATCTACAGATATTCCTCTACAAAGTGCAGAACATGTCAAAGGAGCAGTTAAAATTTCCAGTCATAAAGAAGGCTACCCTCCACAACATGTGAGTAAAAACTTGAGGAAAGGCGGCATCTCTTTAAGAGAAAGGGAAAGGAACAGTATGGATCACAATAGTAACAAAGTTTTTCCCCTGAATGCTCACTCAATCAAGGTGCATGTTGATCAGACAAATGATCAATTCAGGGTGCATGATGGTCAGAAAATGGATCCTTCAGAGCATCTAAGCAAATATAATAATTTGCTAAAAGTTGGGAGGTTACATGAATGTGTAGAATTGCTTAAAGATATGGAAACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACGAAAGGCTGTTAAAGAAGCTTTTGATTACATTAGGCTCATTCCAAATCCAATGCTGAGTACATTTAATATGCTTATGTCGGTGTGTGCAAGCTCCCAATATTCAGAAGGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATAGTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTAGCTAAAGCATTTGGTGCTTATGGAATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCTGAAACACAGCCCATCGACCCAGATCACGTAACTATAGGAGCATTGTTGAAGGCATGCACAAAAGCTGGTCAGGTTGAACGAGCACAAGAAGTGTACAAGATGGTACAAAAATATAACATAAAGGGATGTCCAGAAGTTTACACCATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCTTGTACTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTAATAGATGTTGCTGGTCATGCTAACAAGCTGGATGCTGCCTTTGATGTCCTACAAGAAGCCCGTAAAGGAGGAATACATATTGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGCAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAATCTCTTAAATTGACGATAACAGTTTCAACAGTTAATGCTTTGCTCACTGCACTTTGTGACGGAGATCAATTTCAGAAGGCTTTGGAGGTTTTATTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAGATGCTCCTTTCTCAAGCCAAAAAAGACGGTGTATTCCCTAATCTCATCATGTGTCGATGCATAATTGGAATGTGCCAGCGGAGATTTGAGAAGGCTTGCTTTGTTGGTGAGCCTGTTTTATCTTTTGGCTCAGGACGACCACAAGTTGATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAACAATTGAAGCTGGTGAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTCCCTTATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTAGGAGTAAGTGCAGAAACTTCAAGAAGCTCAAACCTCTGTTCATTAATGGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAATCTGCTTCACATGGAGTTGTTCCGTCTGTATCATTTAAAGTGAGTCCTATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTATACCTCATAACAGTTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTAATATCATCATCATTTAA 3210 0.4187 MSKKSCPWLLKTSYYLLSSPLLSANVSTLVVNANPLPFFSSSFSFSSLLSSSMDVNLSLNHHRALTLTSRTPSLSTLRTHFLGSTHTLRPPPTPPSLRSRNKRHNNNNFGLLRFHSPRFVFKASFHSHSVIVVIIVVTLSAVSLLHFTLNKKKNKTLNQRRGHAKFALSPQGTNVGNRAIDREIVGFTEFQRDSTLTEIGKLKDHHGEDYRVFEKNEIHLPFLKSSVVQEVAVATETSESSSSVIDSGVNNNNGSKVLDESFLSVAFSPSSLQPLEFAEEMAIQVEESQDKVDSDNELPLNMVKSEHTASSLSINNALTTVDEHAKEKIELGAIDDDVLFGESAREGLYMFYKVNKSATGSMTPLSSLKSLSPRASFMNKKGLPSVMGNGALKGSGLSTDIPLQSAEHVKGAVKISSHKEGYPPQHVSKNLRKGGISLRERERNSMDHNSNKVFPLNAHSIKVHVDQTNDQFRVHDGQKMDPSEHLSKYNNLLKVGRLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDYIRLIPNPMLSTFNMLMSVCASSQYSEGAFQVLQLLKDARLEPDCKLYTTLIVTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSCSQTGDWEFACTVYNDMTQKGILPDEIFLSALIDVAGHANKLDAAFDVLQEARKGGIHIGIMSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGVFPNLIMCRCIIGMCQRRFEKACFVGEPVLSFGSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTSVKNRLVENLGVSAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVIDAKELHASTAEVYLITVLKGLKHRLAAGNIIII 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01909 1069 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 497 628 - -
Pumo11g01909 1069 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 775 922 - -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 724 IPR002885 -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 830 864 IPR002885 -
Pumo11g01909 1069 Pfam Pentacotripeptide-repeat region of PRORP 698 840 IPR033443 -
Pumo11g01909 1069 Pfam Pentacotripeptide-repeat region of PRORP 551 684 IPR033443 -
Pumo11g01909 1069 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 682 774 - -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 795 829 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 620 653 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 586 619 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 551 584 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 833 865 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 728 761 IPR002885 -
Pumo11g01909 1069 NCBIfam pentatricopeptide repeat 798 827 IPR002885 -
Pumo11g01909 1069 Coils Coil 875 895 - -
Pumo11g01909 1069 Gene3D Tetratricopeptide repeat domain 513 629 IPR011990 GO:0005515
Pumo11g01909 1069 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 61 1065 - -
Pumo11g01909 1069 Gene3D Tetratricopeptide repeat domain 859 921 IPR011990 GO:0005515
Pumo11g01909 1069 Gene3D Tetratricopeptide repeat domain 791 858 IPR011990 GO:0005515
Pumo11g01909 1069 Pfam Pentatricopeptide repeat domain 853 911 IPR002885 -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Pumo11g01909 1069 Pfam PPR repeat 492 513 IPR002885 -
Pumo11g01909 1069 Gene3D Tetratricopeptide repeat domain 630 790 IPR011990 GO:0005515
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Pumo11g01909 1069 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01909 481 900 Glycosyltransferase AT1G05670 25.761 1.03e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01909 - - gmx:100814164 1764.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01909 11 50877584 50886679 Pumo11g01909 11 50877584 50886679 ECH