Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01881 ATGGCTGTGGACGAAGCTGCTGAATCTCTGAAAGGTTTTGATCCTCAAAAGAAGCCCAAAAGGAACAAGTATGCTTTGGCCTGTGCTATTTTGGCTTCAATGACTTCCATCCTACTAGGTTACGATATTGGAGTGATGAGTGGAGCAGCTCTGTACATAAAAAGAGATCTGAAAGTATCGGACGTGCAAATCGAAATCCTGAACGGTATCATAAACCTGTACTCTCCGGTGGGTTCTTTCATCGCCGGCAGAACCTCCGACTGGATAGGGCGGCGTTACACCATTGTCCTCGCCGGCGTCATCTTCTTCGTCGGAGCCATCCTCATGGGATTCTCCCCCAACTACGCCTTTCTCATGTTTGGCCGCTTCTTCGCCGGCGTCGGCATCGGCTTCGCCTTCCTCATCGCCCCCGTATATACCTCCGAAATCTCCCCTACCTCCTCTCGCGGCTTCCTCACTTCCTTGCCCGAGATATTTTTGAACGGAGGGATTTTAATCGGATACATTTCAAACTACGGATTTTCCAAGCTGGCACTACGCTTGGGTTGGCGGCTCATGCTTGGAGTCGGAGCCATTCCCGCTATTTTCCTAGCCGTGGCAGTGTTAGCCATGCCGGAGTCGCCAAGGTGGCTCGTTGCCAAGGGTCGATTAGGCGAAGCCAAAAAGGTTCTCTACAAAATCTCCGACTCGGACGAAGAGGCTCGGCTCAGACTAGCCGACATTAAAGACACGGCTGGGATCCCTCAGGACTGCGACGACGACGTCGTTTTAGTAACCAAGCAAACCCACGGCCACGGCGTGTGGAAAGAGCTTTTCCTTCACCCCACACCCGCGGTTCGCCACATCTTCATCGCGTCGCTTGGGATTCACTTCTTCGCGCAAGCAACGGGCATAGACGCCGTCGTTTTGTACAGCCCAAGAATCTTCGAGAAGGCCGGGATCAAATCCGATAACCACCTTCTCCTCGCAACGGTTGCTGTTGGGTTCGTGAAGACCTTTTCCATTTTGGTGGCGACTTTTTTCTTGGACCGGGCCGGGCGGCGCCTGTTGCTGTTATGCAGCACGTGGGCCATTGGGCTCAGCATCGCTGCGGTGTTGACCTTTGCGGGCACTTTCTCGATCGGGTCGGGGCCCATCACGTGGGTTTATAGCTCCGAGATTTTCCCGCTGAGGCTACGGGCTCAGGGTGTGGCTATTGGGGCTATAGTGAATAGGGTCACCAGTGGGGTCATCTCCATGACTTTTTTGTCCCTCTACAAGGCTATTACCATTGGGGGTGCTTTCTTTCTTTTTGCTGGCATCGCTGTTGCTGCGTGGATTTTTCACTATACGCTGCTCCCTGAAACACGTGGGAAGACTCTTGAGGAAATTGAAAAGTCTTTCGGTAATTTCTGCAGGAAACCCAAAGCAGAACGAGTTGACGCTAACGGCCGAATCCAATTAAGGACCCGTGCCCAAACTTTGACAACCGTGGACTAG 1479 0.5281 MAVDEAAESLKGFDPQKKPKRNKYALACAILASMTSILLGYDIGVMSGAALYIKRDLKVSDVQIEILNGIINLYSPVGSFIAGRTSDWIGRRYTIVLAGVIFFVGAILMGFSPNYAFLMFGRFFAGVGIGFAFLIAPVYTSEISPTSSRGFLTSLPEIFLNGGILIGYISNYGFSKLALRLGWRLMLGVGAIPAIFLAVAVLAMPESPRWLVAKGRLGEAKKVLYKISDSDEEARLRLADIKDTAGIPQDCDDDVVLVTKQTHGHGVWKELFLHPTPAVRHIFIASLGIHFFAQATGIDAVVLYSPRIFEKAGIKSDNHLLLATVAVGFVKTFSILVATFFLDRAGRRLLLLCSTWAIGLSIAAVLTFAGTFSIGSGPITWVYSSEIFPLRLRAQGVAIGAIVNRVTSGVISMTFLSLYKAITIGGAFFLFAGIAVAAWIFHYTLLPETRGKTLEEIEKSFGNFCRKPKAERVDANGRIQLRTRAQTLTTVD 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01881 492 ProSitePatterns Sugar transport proteins signature 2. 124 149 IPR005829 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 PRINTS Sugar transporter signature 385 397 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 PRINTS Sugar transporter signature 362 383 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 PRINTS Sugar transporter signature 119 138 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 450 IPR020846 GO:0022857
Pumo11g01881 492 FunFam probable polyol transporter 4 18 358 - -
Pumo11g01881 492 Pfam Sugar (and other) transporter 356 461 IPR005828 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 Pfam Sugar (and other) transporter 28 355 IPR005828 GO:0016020|GO:0022857|GO:0055085
Pumo11g01881 492 Gene3D MFS general substrate transporter like domains 18 463 IPR036259 -
Pumo11g01881 492 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 22 462 IPR045262 GO:0015144
Pumo11g01881 492 SUPERFAMILY MFS general substrate transporter 15 459 IPR036259 -
Pumo11g01881 492 ProSitePatterns Sugar transport proteins signature 1. 82 99 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01881 Pumo-Chr11 50560250 50562203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01881 15 486 Organic Solute Cotransporters AT3G18830 62.970 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01881 - - gmx:100816478 858.596