Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01875 ATGAGGTCGCAGGAACCTTCACTTGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAAGCAAGGATGGGTGATAAGTTGATGGTTTTGTTCACAAACTTGCCATCCACCAGGGAGTTCAGAGATGTTCATGTTTACAATGCCGCAATTTCAGGACTTCTTTCTAGTGGCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCAGATAATGTTCTTCCAGATCATGTGACGTGTTCTATTATGGTTATCGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCAATAATAAAGTCATTTTGTGTTGAGGGTTTAATGAGTGAAGCTCTCATCATCCTATCTGAATTGGAGAAAAAAGGTGTTTCTTCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTTTTTGTTGAGATGAAAACTAAAGGGATTAAGCCCACTGAAGCTAACCTTCAACATTCTTATGTATGCATACAGCAGAAAAATGCAACCTGA 612 0.4036 MRSQEPSLVTPRACTVLFPLLGKARMGDKLMVLFTNLPSTREFRDVHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGAIIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEANLQHSYVCIQQKNAT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01875 203 NCBIfam pentatricopeptide repeat 153 187 IPR002885 -
Pumo11g01875 203 NCBIfam pentatricopeptide repeat 48 80 IPR002885 -
Pumo11g01875 203 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 11 188 - -
Pumo11g01875 203 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Pumo11g01875 203 Pfam PPR repeat family 151 187 IPR002885 -
Pumo11g01875 203 Pfam PPR repeat family 44 88 IPR002885 -
Pumo11g01875 203 Pfam PPR repeat 122 148 IPR002885 -
Pumo11g01875 203 Gene3D Tetratricopeptide repeat domain 1 96 IPR011990 GO:0005515
Pumo11g01875 203 Gene3D Tetratricopeptide repeat domain 97 197 IPR011990 GO:0005515
Pumo11g01875 203 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01875 Pumo-Chr11 50516325 50517315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01875 6 192 Miscellaneous Gene Families AT4G11690 26.738 3.33e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01875 - - gmx:100788628 367.081