Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01835 ATGAATTCTCAAGGTAGCTTTGCCAAAGGCGTGTCTGTGTGTGCTGTGAATTATTTATTAAAACCTGTTAAATGCAAAGAGCTTCAAAGTCTCTCGCAAATTGCTTTTGATTATAGTGTTTTACTTATCACAGTTCCAGAATATTTTGCCCGAGTGGTTATTCAATTTGACACTGGAAGCACTTTCTCATTTCAAAGATTAACTGAAAACATGGTTGTCCTTGCTGCATCCATTGTGAGCAAATCTGGCAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGAAAGCAACACACATATATTGAGACGGAGAATGTGCGCTATGTTTACCAGCCAATGGAAACACTATACTTGCTTCTTGTAACAAACAAACATAGCAACATACTGGAAGATTTGACAACTCTGAGACTTCTCTCCAAACTTGTTCCTGAATATTCTTACTCCCTTGATGAAGAGGATATTTGCCAAAATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGCAATACTGTGAGATGGAGAGTCATGAAGAGAAACTGCACAAGCTGGTTATGCAGAGCAAAATCAATGAAACTAAGGATATTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAGAACAGAGGTGATAAAGGGGGATTTGGTCCTTTACAGTCAATGGGCTCTGGAAAAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAGCTGGTTTTGGAAGTGGCTCTGGTTTTGGATTGAGTTCTGATGTTGATTCCTTTTCTACCAAGTCTAAAGGTCGTCCAACTTCATCTGCCACTGCTCCACCAAAAGGTCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAGTTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCATTCTTGAAGATGTTCAGCCAAAACTTGGCCTGTCTCAGGCAGCTGCTCCACCACCTACGGATCCCATCACTTTAACTGTTGAAGAGAAACTAAATGTGACACTAAAACGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGCACATTGTCTCTCCAAATTCTTAACAAAGAGGATGGACATATTCAAGTTCAGGTCCAGACTGGTGAGAATCAAGCTGTCATTTTCAAGACACACCCTAACATGAATAAAGAATTATTTGCCAATGAAAATATACTGGGCCTAAAGGATCCCAATAGGCCTTTCCCCACGGGTCAAGCTGGTGGTTCTGAAGGTGTTGGTCTTTTAAAGTGGCGAATGCAAAGCACTGATGAGTCAATGGTGCCGCTGACAATCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTACGTCAGCATTGAGTATGAGGCTTCGTCATTGTTTGATTTGCGGAATGTTGTGATCTCAGTACCTCTTCCAGCTCTCCGAGAAGCACCATCTGTTAGGCAGATTGATGGGGAATGGAGGTATGACTCAAGGAATTCCTGTTTGGAGTGGTCTGTCCTTCTGATTGATAATTCAAACCGCAGCGGATCAATGGAATTTGTTGTTCCACAAGCCGAATCTTCAGCATTCTTCCCCATTTCAGTTCGTTTCATAGCAACTGATACATTTAGTGACCTGAAGGTCACCAACATCATACCGCTAAATGGTGGTAATCCTCCCAAATATTCTCAGAGAACACAGTTGATCACAGAAAACTACCAAATTGTGTGA 1803 0.411 MNSQGSFAKGVSVCAVNYLLKPVKCKELQSLSQIAFDYSVLLITVPEYFARVVIQFDTGSTFSFQRLTENMVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYIETENVRYVYQPMETLYLLLVTNKHSNILEDLTTLRLLSKLVPEYSYSLDEEDICQNAFELIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDIMKRKASEIDKSKIEKNRGDKGGFGPLQSMGSGKIENSFSDLSISSSGAGFGSGSGFGLSSDVDSFSTKSKGRPTSSATAPPKGLGMKLGKSQRTNQFLESLKAEGEVILEDVQPKLGLSQAAAPPPTDPITLTVEEKLNVTLKRDGGVSNFDVQGTLSLQILNKEDGHIQVQVQTGENQAVIFKTHPNMNKELFANENILGLKDPNRPFPTGQAGGSEGVGLLKWRMQSTDESMVPLTINCWPSSSGNETYVSIEYEASSLFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSCLEWSVLLIDNSNRSGSMEFVVPQAESSAFFPISVRFIATDTFSDLKVTNIIPLNGGNPPKYSQRTQLITENYQIV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01835 600 ProSiteProfiles Mu homology domain (MHD) profile. 355 600 IPR028565 -
Pumo11g01835 600 MobiDBLite consensus disorder prediction 291 318 - -
Pumo11g01835 600 MobiDBLite consensus disorder prediction 233 259 - -
Pumo11g01835 600 Gene3D Mu homology domain, subdomain B 358 579 - -
Pumo11g01835 600 Pfam Adaptor complexes medium subunit family 355 579 IPR028565 -
Pumo11g01835 600 MobiDBLite consensus disorder prediction 233 247 - -
Pumo11g01835 600 Pfam Clathrin adaptor complex small chain 78 200 IPR022775 -
Pumo11g01835 600 Gene3D - 73 211 - -
Pumo11g01835 600 Gene3D Mu homology domain, subdomain B 463 562 - -
Pumo11g01835 600 FunFam Coatomer subunit delta 358 466 - -
Pumo11g01835 600 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 355 599 IPR036168 -
Pumo11g01835 600 PANTHER COATOMER SUBUNIT DELTA 71 600 IPR027059 GO:0006890|GO:0030126
Pumo11g01835 600 CDD Delta_COP_N 74 203 - -
Pumo11g01835 600 CDD AP_delta-COPI_MHD 356 597 - -
Pumo11g01835 600 FunFam Coatomer subunit delta 73 211 - -
Pumo11g01835 600 FunFam Coatomer subunit delta 467 562 - -
Pumo11g01835 600 SUPERFAMILY SNARE-like 75 212 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01835 Pumo-Chr11 50240091 50246489 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01835 K20471 - gmx:100780122 969.533