Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01818 ATGGGGAAGGCGAAGGGAAAGCACCGTTTGGATAAGTACTACCACTTAGCGAAAGAGCACGGTTACAGGTCTCGAGCCTCATGGAAGCTGGTCCAGCTCAACTCCAAGTTCCGGTTCCTGGAGTCGGCGCGCGCCGTGCTCGACCTCTGCGCCGCCCCCGGAGGGTGGATGCAGGTGGCGGTCCAGCGCGTCCCCGTGGACCACCTGGTGATCGGCGTGGACCTGGCCCCCATCGCCCCCATCCGCGGCGCCATCGCCATCCTGGAAGACATCACCAAGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGACCACCGTTGCCCCGCCTTCGACGTCATATTGCACGACGGTTCCCCCAACGTCGGCGGCGCCTGGGCTCAGGAAGCCATGAGCCAGAACGCCCTCGTTATTGATGCTGTCAAGTTGGCCACTCAGTTCTTAGCCCCCAAGGGCATCTTTGTTACCAAAATTTTCAGGTCGCAGGATTACAGTTCTGTGGTGTATTGCTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAGCCTGCGGCTAGTCGTTCTGAATCTGCTGAGATATATGTTTTGGGGCTTAGGTACAAGGCTCCCGCTAAGATTGATCCGCGTCTTCTTGATGTGAAGCATCTCTTTCAGGGATCGGTGGAACCGCAGCCTAAGGTGGTGGATGTACTTAGAGATTCTAAGCAAAAAAGGCACCGTGATGGCTATGAAGATGGAAACACAACTTTGAGGAAGGTGTCTTCAGCTGCAAATTTCATTTGGTCAGATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCCATAACCTTTACTGATCCAGCTGATTCACCAATGAAGGATCATGACCTAACTACTGAAGAGGTAAAATCTCTCTGTGATGATTTAAGGGTTCTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCAACTCAAAAGCCGGATCCTACTACCACTACAGAACAGATGGAAAATGAGCCTAAGGTGGACGAAGAAGATAGAATACTCAATGAAATGGAGGAACTGACTTATGTAATGGACCACAAGAAGAAACGTGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAATAGAGGATGGTTATGTAGATCAGGAGTTGTTTTCTCTTTCCTCTATCAAGGGTAAGAAGGATCTGGTAGCTGTTGACAACACTGAATATGAAGGCGATGAAGGTGAAGTAGAAGACAGTGAGAATGAAGAAACCCATGAAGGCCCAGAGCATTCATCCAGTGAATTGGAAGATTCTGATGAGGAACGTAAAAGATACAATGAACAAATGGAAGATTTGCTGGATCAAGCTTATGAGCGGTTTGTGATCAGAAAGGAAGGAAGTGCAAAACAGCGGAAGCGAATTAAAAAATCCTATGATGCAGAGGCCCAACTTTTGGAGGGTGGTGAGGATGTTGATATTGTTCAATCCAAGTATGATTCAGATGAAGATCAGGGTATTCAAGAAGCAAATCCATTGATGGTGCCACTTAATGATGGGGCCGAGCTCACCCAAGAGGAGATCATGAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGCAGAGGAAGGAAACTTTGAGAAGGATGAGAGTAAAGATGAAATGGATATAGACGAGCCTAAGGAGAAGATATCCATTGCCAAAAAGGTCAAAGAAAATAAAACAGCAGCTCCAGCAGTGGCAGATCACCCTCTGCCTCAACCATCCAAGGCAGCGGATGATTTTGAAATAGTTCCTGCACCTGATACTGATTCAAGTGATGATTCATCATCGGAAGAAGATATAGAAAGCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGTTGAGGAAAAAGCAACGGGAGCGGATACTGGATGATGCATATAACAAGTACATGTTTGATGACGAGGGATTGCCCAAGTGGTTTCTAGATGAGGAGAAGAGACACCGGCAACCAATAAAGCCTATTACCAAAGAGGAAGTTGTGGCAATGAGAGCGCAATTTAAAGAAATTGATGCTCGACCTGCGAAGAAGGTTGCAGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAAGAAGCTTGAGAAGGTACGGAAGAAGGCCAATGCCATATCAGATCAGGCAGACATATCTGATCGTTCGAAAAGGAAGCAAATTGAACAACTATATAAAAGGGCTGTTCCTAAGAAGCCTAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTCCAAGTAAAGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGCAACGTGGAATGAGTAAGGCAGGAAAAGGAGGTTCTAAGATGAAGGGCAAGGCTCCAAAGGGCAAAGGATCTTCAAAGGCCTCTGCCAAAAAAGGAAAACAGAGGACTTAA 2481 0.468 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFRFLESARAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAILEDITKPECKSRIKKLMNDHRCPAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDSKQKRHRDGYEDGNTTLRKVSSAANFIWSDSPLEILGSVTSITFTDPADSPMKDHDLTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKPDPTTTTEQMENEPKVDEEDRILNEMEELTYVMDHKKKRAKKLLAKRRAKDKARKATGMQMDAIEDGYVDQELFSLSSIKGKKDLVAVDNTEYEGDEGEVEDSENEETHEGPEHSSSELEDSDEERKRYNEQMEDLLDQAYERFVIRKEGSAKQRKRIKKSYDAEAQLLEGGEDVDIVQSKYDSDEDQGIQEANPLMVPLNDGAELTQEEIMNKWFSQDVFAEAAEEGNFEKDESKDEMDIDEPKEKISIAKKVKENKTAAPAVADHPLPQPSKAADDFEIVPAPDTDSSDDSSSEEDIESKAEILAYAKKMLRKKQRERILDDAYNKYMFDDEGLPKWFLDEEKRHRQPIKPITKEEVVAMRAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANAISDQADISDRSKRKQIEQLYKRAVPKKPKKEYVVAKKGVQVKAGKGKVLVDRRMKKDARQRGMSKAGKGGSKMKGKAPKGKGSSKASAKKGKQRT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01818 826 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Pumo11g01818 826 CDD AdoMet_MTases 46 161 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 422 464 - -
Pumo11g01818 826 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 799 IPR028589 GO:0008649|GO:0031167
Pumo11g01818 826 Coils Coil 705 725 - -
Pumo11g01818 826 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 237 - -
Pumo11g01818 826 Pfam Domain of unknown function (DUF3381) 235 384 IPR024576 -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 437 464 - -
Pumo11g01818 826 Coils Coil 449 469 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 326 348 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 703 722 - -
Pumo11g01818 826 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Pumo11g01818 826 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 556 630 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 556 584 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 708 722 - -
Pumo11g01818 826 Pfam Spb1 C-terminal domain 605 793 IPR012920 GO:0005634|GO:0006364|GO:0008168
Pumo11g01818 826 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 803 826 - -
Pumo11g01818 826 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Pumo11g01818 826 MobiDBLite consensus disorder prediction 422 436 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 777 794 - -
Pumo11g01818 826 MobiDBLite consensus disorder prediction 774 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01818 Pumo-Chr11 50003802 50008602 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01818 K14857 - gmx:100790741 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01818 11 50003802 50008602 Pumo11g01818 11 50003802 50008602 ECH