Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01803 ATGCGTGTTGCGGAAGACGAAGAGAATAGAAACGGCGTCGTTGAGCTCTGGACGAAGCTTCTAGAACGATTAGCGAAGAAGGATCTTGAAGCCACCCTCACCGCGGAAGCCATTCGGCCTACCAAACCTTATTCCGAAGTTGTTTCTAAACGCCGTGAGTTCGCAGTTCTGTGCGGCGAAGCAAGGAAGAGTGTGAGGATGGCGGAAGAAGCAATTCTGGGATACCTAGAGAAGAACGATGAGATTAGAGACTCGGGTGAGTTCGCAGCTGAACGCGGCATTGATCACAACGAGATGGTGAATGTGATAAAGAGCTTGCACGGTTTCAGATACGTTGATGCGCAAGACATTAAGCGAGAAACATGGGTACTCACTGATGAGGGGAATACGTATGCTACTGTAGGATCCCCTGAAGTGCAACTTTTTTTGGCCATACCGCCAGAGGGTATCTCTAAGGAAGAGCTTCAGAAAAAGTTGGATCCTTCTGTCTTCAAGATAGGTTGTGCTCAGGCTGCAAAGAACAAATGGGTGGAGATGGGAAAACAGTTAATTACTAGAAAGGTCCAACAAGTGGATGACAAGGTCAAAGATCTCCTTCTTCAAATACAACAGGGGCTGAACATTGGTTCAGACGAGATCAAAGCACTCAAAGTGAGAAAGCTCATTGTTCCACAGACGTGGAAGGGTTACTCATTGAAAAGAGGTCCTAATTATGCGCCCAAAAGAAAGAAGGTTGTCACTGATCTGACTCGTGATAATTTTCAGAGTGGTGAGTGGAAGGAACTAGAGTTCAAGGAGTACAATTATAGTGCTAAAGGTCAGCCTCTTGAGGGTGGCAATCTTCATCCGTTGCTGAAGGTACGTGCTCAGCTGAAACAGATTTTCCTCTGCATGGGGTTCGAGGAGATGCCAACAAATAATTTTGTCGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCCCGTGATTCACATGATACATTCTTTTTGGAAACTCCTTCAACAACAAAGATATTGCCAGAAGATTATGTTCAGAGAGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGAGGGTATGCATATGACTGGAAGAGAGAGGAAGCAAATAAAAACCTCCTGCGAACCCATACAACTGCTGTTTCCTCCAGGATGCTTTACCAATTAGCACAGAAACCATTTGCCCCAAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCCGTTGATCGGACACATCTTGCTGAGTTCCACCAAATAGAAGGCCTTGTATGCGATCGTGGACTCACTCTATGTGACTTAATAGGAGTCCTACATGATTTCTTCTCACGCTTAGGCATGACCAAGCTGAAGTTCAAACCAGCTTACAATCCATACACTGAACCTAGCATGGAGATTTTTAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGCATGTTCAGACCTGAAATGTTGCAGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCGTGGGGCCTTTCCCTTGAAAGGCCAACGATGATACTGTACGGGATAGATAACATCAGAGATCTCTTTGGACACAAGGTGGATCTTGGGCTTATAAAGAAAAATCCAATATGTCGTCTTGGAATTGACTAA 1665 0.4468 MRVAEDEENRNGVVELWTKLLERLAKKDLEATLTAEAIRPTKPYSEVVSKRREFAVLCGEARKSVRMAEEAILGYLEKNDEIRDSGEFAAERGIDHNEMVNVIKSLHGFRYVDAQDIKRETWVLTDEGNTYATVGSPEVQLFLAIPPEGISKEELQKKLDPSVFKIGCAQAAKNKWVEMGKQLITRKVQQVDDKVKDLLLQIQQGLNIGSDEIKALKVRKLIVPQTWKGYSLKRGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGNLHPLLKVRAQLKQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTKILPEDYVQRVKQVHESGGYGSRGYAYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFAPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNPICRLGID 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01803 554 Gene3D - 137 191 - -
Pumo11g01803 554 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 137 191 - -
Pumo11g01803 554 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 286 547 IPR006195 -
Pumo11g01803 554 SUPERFAMILY Class II aaRS and biotin synthetases 267 539 IPR045864 -
Pumo11g01803 554 FunFam Phenylalanine--tRNA ligase alpha subunit 282 553 - -
Pumo11g01803 554 Pfam PheRS DNA binding domain 3 136 191 IPR040725 -
Pumo11g01803 554 Gene3D - 73 265 - -
Pumo11g01803 554 NCBIfam phenylalanine--tRNA ligase subunit alpha 240 545 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Pumo11g01803 554 Gene3D - 124 222 - -
Pumo11g01803 554 PANTHER PHENYLALANYL-TRNA SYNTHETASE 116 543 - -
Pumo11g01803 554 Pfam PheRS DNA binding domain 1 69 122 IPR040724 -
Pumo11g01803 554 CDD PheRS_alpha_core 282 539 - -
Pumo11g01803 554 Gene3D Bira Bifunctional Protein; Domain 2 282 553 IPR045864 -
Pumo11g01803 554 Pfam tRNA synthetases class II core domain (F) 267 540 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01803 Pumo-Chr11 49838225 49843838 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01803 K01889 - gmx:100792325 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01803 11 49838225 49843838 Pumo11g01803 11 49838225 49843838 ECH