Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01789 ATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTGCCAGCTTCACTGTCGCTTCTCGCACCAGAAGTCCCTCCCACCTTGTATTTTCTCACAGAAACCCGTGCTCGATAACTTCTTCCTTGCCAAGCCCATATGGCCATTCATCAGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACTTGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGTAATTGAAGCCAAGAAGGGGAATCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTCAATTCCCAAGTGGCTCAGAGAGTTATTTCACAGCTTGTGACTCTCGCTACTATTGATGAAAATGCAGATATACTGGTATATATAAATTGCCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACTGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGTGGAGAAAAGGGAATGCGCTATGCAATGCCAAATGCTCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGACGGTGTCCTGGAAACAGAGTATTGA 825 0.4448 MVPQALSVPASASFTVASRTRSPSHLVFSHRNPCSITSSLPSPYGHSSEVGLSSKSRGFPLKLDEKNIHGASTSYGVIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01789 274 Gene3D - 79 274 - -
Pumo11g01789 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Pumo11g01789 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 Pfam Clp protease 99 272 IPR023562 -
Pumo11g01789 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 69 273 IPR023562 -
Pumo11g01789 274 FunFam ATP-dependent Clp protease proteolytic subunit 79 274 - -
Pumo11g01789 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Pumo11g01789 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Pumo11g01789 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01789 Pumo-Chr11 49694624 49698478 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01789 K01358 - gmx:100799710 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01789 11 49694624 49698478 Pumo11g01789 11 49694624 49698478 ECH