Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01768 ATGAAAGAAAGGGCTCCGAAATGTGTGAAACTACGAAGGGTTGCCACCTGCTTTTACGGTACGGTTCGCGGAATATGCGTGTGTGGCAGCGAGGGCATAGCGACGTCGTCCAGGGACCGAACGGTTAGGTTGTGGTCCCTGGACAACAACCGCAAGTTCGTGAGTTCCAAGATTCTGTTGGGCCACACGAGCTTCGTGGGACCCTTGGCATGGATTCCTCCGAATTCGGAGTTCCCGCATGGTGGGGTCGTGTCTGGCGGCATGGACACACTCGTTTGTGTCTGGGACTTGAAGAGTGGTGAGAAGGTGCACACTCTCAAGGGCCATCAGTTGCAGGTCACTGGCATTGCCTTTGATGATGGGGATGTTGTGTCCTCTTCTGTTGATTGTACCTTAAGAAGGTGGAGGAATGGGCAATCTTTAGAGTCGTGGGAGGCTCATAAGGCACCGGTTCAAGCAATTATAAAGCTGCCCTCAGGGGAGCTAGTTACAGGTTCAAGTGACACTACTTTGAAGCTTTGGAGAGGAACAACTTGTTTACATACCTTTCAAGGACATTCAGATACAGTTCGAGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAATTGCTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGATCATTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCATTTGGGATGCCAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCAGATGGAGTAGTGCGCATTTGGACCGTAGATCAGGATAATGTTGCTGACCAGCTAGAACTTGATTTATACACTTCACAACTTTCTCAATACAAATCTAGTAGAAAGAGGGTTGGAGGATTGAAACTGGAAGAGTTACCAGGCTTGGAGGACACTGAAGATCCCAGGAACTACTGA 1026 0.4737 MKERAPKCVKLRRVATCFYGTVRGICVCGSEGIATSSRDRTVRLWSLDNNRKFVSSKILLGHTSFVGPLAWIPPNSEFPHGGVVSGGMDTLVCVWDLKSGEKVHTLKGHQLQVTGIAFDDGDVVSSSVDCTLRRWRNGQSLESWEAHKAPVQAIIKLPSGELVTGSSDTTLKLWRGTTCLHTFQGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGELLMEMVGHTAIVYSVDSHASGLIVSGSEDHFAKVWKDGVCVQSIEHPGCIWDAKFMENGDIVTACSDGVVRIWTVDQDNVADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLEDTEDPRNY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01768 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 33 55 IPR001680 GO:0005515
Pumo11g01768 341 ProSitePatterns Trp-Asp (WD) repeats signature. 83 97 IPR019775 -
Pumo11g01768 341 SMART WD40_4 99 136 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 216 254 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 255 292 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 137 175 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 176 214 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 8 46 IPR001680 GO:0005515
Pumo11g01768 341 SMART WD40_4 52 96 IPR001680 GO:0005515
Pumo11g01768 341 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 21 334 - -
Pumo11g01768 341 FunFam Polyubiquitin binding protein (Doa1/Ufd3) 8 311 - -
Pumo11g01768 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 254 IPR001680 GO:0005515
Pumo11g01768 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 174 IPR001680 GO:0005515
Pumo11g01768 341 SUPERFAMILY WD40 repeat-like 20 303 IPR036322 GO:0005515
Pumo11g01768 341 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Pumo11g01768 341 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Pumo11g01768 341 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Pumo11g01768 341 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Pumo11g01768 341 Pfam WD domain, G-beta repeat 100 135 IPR001680 GO:0005515
Pumo11g01768 341 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Pumo11g01768 341 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515
Pumo11g01768 341 Pfam WD domain, G-beta repeat 22 46 IPR001680 GO:0005515
Pumo11g01768 341 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Pumo11g01768 341 CDD WD40 26 291 - -
Pumo11g01768 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 213 IPR001680 GO:0005515
Pumo11g01768 341 Gene3D - 7 309 IPR015943 GO:0005515
Pumo11g01768 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 105 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01768 Pumo-Chr11 49259119 49264790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01768 22 338 Acyl Lipid Metabolism Gene Families AT3G18860 71.787 9.39e-174 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01768 K14018 - gmx:100805404 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01768 11 49259119 49264790 Pumo11g01768 11 49259119 49264790 ECH