LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01760	ATGTTGTCTGCTTATGTTGGTTCAGATGGGTACGAGACTGAAGCGCTTGATTTGTTTACTAGAATGCAATCTGCACGTGACACAATTGGGATTGATGAGATCACTCTCACAACCATGCTTAACCTTACTGCCAAACTACGTGTGCTGTGTTATGGAAAGCAGATGCATTCATATATGGTGAAAACTGCAAATGATTTAAGTAAGTTTGCTATGAGTTCTCTCATAGACATGTACTCTAAATGTGGCTCCTTTCAAGATGCATGCAATGTATTTGGCGGTTTTGATGGGATGGTGGACTTGGTTTCCAAGAATGCAATGATTGCAGCTTGTTGTAGGGAAGGAAAGATGGACATGGCCTTAGATGTATTTTGGAAAAATCCTGAACTAAATGATACCGTGTCTTGGAACACATTGATTGCAGGATACGCCCAGAATGGTTATGTGGAGAAATCACTTACCTTGTTTGTTGAGATGATTGAAAATGGTGTTGGTTTCAATGAACACACTTTAGCTAGTGTTTTGAGTGCCTGCTCGGGTCTAAAATGTTTAAAACATGGCAAATCTGTTCATGCTTGGGTGTTGAAAAAGGGTTACAGTTCAAATCAATTTATTAGCAGTGGCATTGTTGACTTCTACTCTAAGTGCGGGAATATCAGATATGCAGAGTTAGTCTATGCAGAAATTGGGATTAAAAGTCCATTTGCAGTTGCATCGTTGATTGCAGCCTACTCATCTCAAGGTAACATGACAGGAGCCCAAAGGCTTTTTGATTCACTGATGGAAAGAAACTCTGTTGTATGGACAGCTCTATGTTCTGGCTATGTCAAATCACAACAATGTGAGGCAGTCTTCAAACTTTTCAGAGAGTTTAGAACTAAAGAAGAACTAGTTCCTGATGCAATGATCATTATCAGTGTGCTTGGTGCCTGTGCAATACAAGCTGACCTTAGTTTGGGAAAGCAAATTCATGCTTACATCTTGAGAATGAGATTTAAGGTGGATAAGAAATTACTGAGTGCTTTGGTTGATATGTACTCAAAATGTGGGAATGTTGCATATGCCAAGAAAATCTTCCGACTAGTTACTGATAGTGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCAATTCAGCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCCGACGCAGTCACTTTTGTTGCACTTCTATCAGCTTGTCGACACCGTGGATTAGTAGAACTAGGAGAGCAATTTTTTATTTCTATGGAACAAGATTACAATGTATTGCCTGAGATTTACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCAGTAGAATTCATGAGGAAGATTCCCATAAAGATAGATGCTACAATATGGGGAGCATTTCTTAATGCTTGTCAGATGAGCAGCGATGCAGCACTTGTCAAACAGGCAGAAGAGGAACTATTAAAAGTTGAGGCAGATAACGGGTCTAGATATGTGCAGTTGGCCAATGCCTATGCTGCCAAAGGGAAATGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGATACGAGGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGAAAATGGTATTCATGTATTTACTTCTGGTGATAGATCTCATTCAAAAGCAGATGCAATATATTCAACTTTGACATGCTTGAATGGGAAACTGTATTTATCTTTCACAGAACTGAAGCAACTTTATGAAATTCAGGGTGATGTTGAGGATATATTTTGA	1800	0.3878	MLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTTMLNLTAKLRVLCYGKQMHSYMVKTANDLSKFAMSSLIDMYSKCGSFQDACNVFGGFDGMVDLVSKNAMIAACCREGKMDMALDVFWKNPELNDTVSWNTLIAGYAQNGYVEKSLTLFVEMIENGVGFNEHTLASVLSACSGLKCLKHGKSVHAWVLKKGYSSNQFISSGIVDFYSKCGNIRYAELVYAEIGIKSPFAVASLIAAYSSQGNMTGAQRLFDSLMERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEELVPDAMIIISVLGACAIQADLSLGKQIHAYILRMRFKVDKKLLSALVDMYSKCGNVAYAKKIFRLVTDSDRDAILYNVMIAGYAHHGFENKAIQLFQEMLNKSVKPDAVTFVALLSACRHRGLVELGEQFFISMEQDYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKGKWDEMGRIRKKMRGYEAKKLAGCSWIYVENGIHVFTSGDRSHSKADAIYSTLTCLNGKLYLSFTELKQLYEIQGDVEDIF	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01760	599	FunFam	Pentatricopeptide repeat-containing protein, chloroplastic	336	564	-	-
	Pumo11g01760	599	NCBIfam	pentatricopeptide repeat	104	123	IPR002885	-
	Pumo11g01760	599	NCBIfam	pentatricopeptide repeat	133	164	IPR002885	-
	Pumo11g01760	599	NCBIfam	pentatricopeptide repeat	370	403	IPR002885	-
	Pumo11g01760	599	Gene3D	Tetratricopeptide repeat domain	368	561	IPR011990	GO:0005515
	Pumo11g01760	599	Gene3D	Tetratricopeptide repeat domain	1	94	IPR011990	GO:0005515
	Pumo11g01760	599	Gene3D	Tetratricopeptide repeat domain	95	201	IPR011990	GO:0005515
	Pumo11g01760	599	Gene3D	Tetratricopeptide repeat domain	208	367	IPR011990	GO:0005515
	Pumo11g01760	599	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	367	401	IPR002885	-
	Pumo11g01760	599	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	131	165	IPR002885	-
	Pumo11g01760	599	Pfam	E motif	486	545	IPR046848	-
	Pumo11g01760	599	Pfam	PPR repeat	265	292	IPR002885	-
	Pumo11g01760	599	Pfam	PPR repeat	102	123	IPR002885	-
	Pumo11g01760	599	Pfam	PPR repeat	238	263	IPR002885	-
	Pumo11g01760	599	Pfam	PPR repeat	71	91	IPR002885	-
	Pumo11g01760	599	Pfam	PPR repeat	441	464	IPR002885	-
	Pumo11g01760	599	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	234	578	IPR046960	GO:0003723\|GO:0009451
	Pumo11g01760	599	Pfam	PPR repeat family	131	177	IPR002885	-
	Pumo11g01760	599	Pfam	PPR repeat family	367	413	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01760	Pumo-Chr11	49171008	49172807	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01760	10	571	Glycoside Hydrolase	AT3G49170	32.447	1.44e-92	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01760	-		-	gmx:100803987	1112.44