Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01746 ATGACAAACGCACACGGTGGCGCCATGTTAGTAGAGCGAAATACTACAAACAACAACACACAGAGACAAAAATTCGGAGCCTTATTGCACTCCGAACCGACGTCGCTTCACTCCAACCACAAGGACGATGACGAATTCTCCCAAAACCACCGTTACAGCAACTCGAGCCCCAGAAACTACGGCGATAGCAGCACCACAAGCAGCAACAATGCCTCTCCCTGCACGATGTCCCCATGGAACTACCAACCTAATAATAATTATAATTCTTCCTCTCCTCTCAACAAGTCTCCATGGTTATTGCCCTCCTCACCGGCGATAAACCTCTTCCACCACCACCGCCACGACGACGAGGTCCCCGAGAACGGCCTCCTCGGATCCCTCGTCCGCGAAGAGGGCCACATATATTCCCTCGCCGTTTCCGGGGACTTGCTGTACACCGGCTCCGACAGCAAGAACATAAGAGTGTGGAAGCATCTCAAGGACTTCACCGGCTTCAAATCAAGCAGCGGATTGGTGAAAACGATTGTTATCTCCGGCGGGAAAATCTTCACCGGCCACCAAGACGGCAAGATCAGAGTGTGGAAGGTTTCGTCCAAGAATCCGAGAAACCATAAACGTATCGGAAGCTTGCCGACGTTCAAAGAGTATGTCAAGAGTTCGATGAACCCGAAGAACTACGTGGAGGTTCGGCGGAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGTCTGAGCCTCGACGAGGAGGAAGGGTTGTTGTACTCGGGCTCGTGGGACAAGTCGCTGAAGGTGTGGCGCGTGGCGGATTCCAAGTGCTTGGAGTCGATTAACGCGCACGATGACGCCGTGAACGCGGTGGTGGCGGCGTTCAGAGGGTGCGTGTTGACGGGGTCCGCGGACGGGACGGTGAGGATGTGGAAGAGGGAGAGCGAGGGGAAGAAGCCAAAGCACGTGTTGGACCGGATTTTGCTGAAGCAGGAGAACGCCGTTACGGCGCTGGCGGTGAACCGTTTGGCCACGGTGGTTTATTGCGGTTCCTCTGATGGGTTGGTGAACTTCTGGGAGCGTCACCAGAAGGGTGGGTTGTCGCACGGCGGCGTTTTGAGGGGGCACAAGCTCGCCGTTCTCTGCCTCGCCGCCGCGGGGAACTTTGTCTTCAGTGGCTCTGCGGATAAGAATGTGTGCGTGTGGAAGCGTGATGAGAATGGGTTCCACACGTGCCATTCGGTTCTCACGGGTCACACTGGTCCTGTTAAGTGTATCGCCGTGGAGGAAGAAGTGCCGCCGCCGGAGGGTCGTTGCGAGAAGGGGGACCAGGGGTGGATTGTGTACACCGGGAGTTTGGACAAGTCGGTGAAGGTGTGGCGCGTGGCTGAGCACTGCGCCGGAAGCGAGCGTGTTCCAAAGCTGGGCCACACCGGGTCAGGCCGGTTCGCCATATCATTCCTCCTCCGCCGCTGGATTCAGTTATTCTTCGCCAGGGAAAATGGGTGTTAA 1506 0.5644 MTNAHGGAMLVERNTTNNNTQRQKFGALLHSEPTSLHSNHKDDDEFSQNHRYSNSSPRNYGDSSTTSSNNASPCTMSPWNYQPNNNYNSSSPLNKSPWLLPSSPAINLFHHHRHDDEVPENGLLGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPRNHKRIGSLPTFKEYVKSSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKSLKVWRVADSKCLESINAHDDAVNAVVAAFRGCVLTGSADGTVRMWKRESEGKKPKHVLDRILLKQENAVTALAVNRLATVVYCGSSDGLVNFWERHQKGGLSHGGVLRGHKLAVLCLAAAGNFVFSGSADKNVCVWKRDENGFHTCHSVLTGHTGPVKCIAVEEEVPPPEGRCEKGDQGWIVYTGSLDKSVKVWRVAEHCAGSERVPKLGHTGSGRFAISFLLRRWIQLFFARENGC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01746 501 SUPERFAMILY WD40 repeat-like 126 462 IPR036322 GO:0005515
Pumo11g01746 501 MobiDBLite consensus disorder prediction 50 77 - -
Pumo11g01746 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 401 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 364 401 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 120 157 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 407 459 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 158 195 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 234 269 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 272 310 IPR001680 GO:0005515
Pumo11g01746 501 SMART WD40_4 319 358 IPR001680 GO:0005515
Pumo11g01746 501 Gene3D - 365 486 IPR015943 GO:0005515
Pumo11g01746 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Pumo11g01746 501 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 65 462 IPR045182 -
Pumo11g01746 501 FunFam BnaA09g28200D protein 227 314 - -
Pumo11g01746 501 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Pumo11g01746 501 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Pumo11g01746 501 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Pumo11g01746 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 270 - -
Pumo11g01746 501 Gene3D - 231 364 IPR015943 GO:0005515
Pumo11g01746 501 Gene3D - 114 230 IPR015943 GO:0005515
Pumo11g01746 501 CDD WD40 131 459 - -
Pumo11g01746 501 MobiDBLite consensus disorder prediction 35 49 - -
Pumo11g01746 501 Pfam WD domain, G-beta repeat 410 458 IPR001680 GO:0005515
Pumo11g01746 501 Pfam WD domain, G-beta repeat 274 310 IPR001680 GO:0005515
Pumo11g01746 501 Pfam WD domain, G-beta repeat 131 157 IPR001680 GO:0005515
Pumo11g01746 501 Pfam WD domain, G-beta repeat 369 401 IPR001680 GO:0005515
Pumo11g01746 501 Pfam WD domain, G-beta repeat 240 268 IPR001680 GO:0005515
Pumo11g01746 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 310 IPR001680 GO:0005515
Pumo11g01746 501 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01746 Pumo-Chr11 49029540 49031157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01746 238 458 Miscellaneous Gene Families AT5G08390 25.446 7.74e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01746 - - gmx:100807706 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01746 11 49029540 49031157 Pumo11g01746 11 49029540 49031157 ECH