Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01712 ATGAATGAGATGGCCAATGGTGGCAACACTGGTCATCTCTTCAAGCTCTTGCTTTTCCTTCTAACTCTTCACTCCTCACTCGCTGAGATTTTCTTCGAAGAAAATTTCGAAGATGGATGGAAGAGCCGTTGGGTGCTATCCGATTGGAAAAGGAGTGAAGGAAAAGCGGGTACCTTCAAGCACACAGCAGGGAAATGGGCTGGAGATCCTGATGACAAAGGTCTTCAGACATATAATGACGCCAAGCATTTCGCCATATCTGCAAAGATACCAGAGCTTAGCAATAAGGAGAGAACCCTGGTGGTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGCGGCGGTTACATCAAACTTCTATCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGTTCACAGACAAAGAAGCTCCATCTTATACTATCATACCAGGGACAGAATTACCCTATTAGAAAAGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTGTCCTTGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACACAGATTGGGATATCCTTCCTCCAAGGAAAATCAAGGATGTCCATGCAAAAAAGCCGGCAGACTGGGATGATAGAGAGTACATTGAAGACCCAAATGATATCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGATTATGGAAGCCCCCAAAGATTCCCAATCCGGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTAAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAGTTGTGGATGAATTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGTGAAAGAAGGAGGAGGGAGAGGGATCATAAATATGGAAATAAGAGGCGTCGTCGGAGGCCGGATCCCCACGATATGGATGATTACCATGTAAGTCTAAAAAACTCTGTTATTTAA 1284 0.4245 MNEMANGGNTGHLFKLLLFLLTLHSSLAEIFFEENFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWAGDPDDKGLQTYNDAKHFAISAKIPELSNKERTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVHAKKPADWDDREYIEDPNDIKPEGYDSIPAEIPDPKAKKPVDWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQVVDEFMANNREAEKEAFEEAEKERRAREEEEAQRAREEGERRRRERDHKYGNKRRRRRPDPHDMDDYHVSLKNSVI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01712 427 PRINTS Calreticulin signature 109 127 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PRINTS Calreticulin signature 252 274 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PRINTS Calreticulin signature 290 309 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PRINTS Calreticulin signature 323 343 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PRINTS Calreticulin signature 135 151 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PRINTS Calreticulin signature 224 237 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 Coils Coil 360 398 - -
Pumo11g01712 427 MobiDBLite consensus disorder prediction 252 272 - -
Pumo11g01712 427 PIRSF Calreticulin 9 418 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 PANTHER CALRETICULIN AND CALNEXIN 15 389 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 Pfam Calreticulin family 269 342 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 Pfam Calreticulin family 32 266 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pumo11g01712 427 Gene3D Calreticulin/calnexin, P domain 203 323 IPR009033 GO:0005509|GO:0005515
Pumo11g01712 427 FunFam Calreticulin 214 315 - -
Pumo11g01712 427 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Pumo11g01712 427 MobiDBLite consensus disorder prediction 363 427 - -
Pumo11g01712 427 FunFam Calreticulin 1b 29 212 - -
Pumo11g01712 427 Gene3D - 29 384 - -
Pumo11g01712 427 SUPERFAMILY P-domain of calnexin/calreticulin 210 325 IPR009033 GO:0005509|GO:0005515
Pumo11g01712 427 ProSitePatterns Calreticulin family signature 2. 139 147 IPR018124 GO:0005509
Pumo11g01712 427 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 227 IPR013320 -
Pumo11g01712 427 MobiDBLite consensus disorder prediction 232 276 - -
Pumo11g01712 427 MobiDBLite consensus disorder prediction 363 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01712 Pumo-Chr11 48780236 48786675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01712 12 350 Miscellaneous Gene Families AT5G61790 35.176 9.38e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01712 K08057 - gmx:100802428 768.459