Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01678 ATGCTGATGCAACAATTTCATGTATCAAATTATTCAAGTCCATCTTGTCTCATCCTTCAGAAGCCATGCCTCCGTGGCATTACTCACCCTTCTTTTCGGGTTTGGTCAAGGCCAAACCAAAGGAAGCAGCAAAAAAGGGTCACTTATGGTTATGGGTGCAGGGGTAGTAGTGGCACCAAAATCAAAGCTGTGGCTGTGAGTGAAGTTGAAACCAAATCAGTGAAAGTTAAAGCCACCATAACTGTTCAGCCAACCGTTGGGTCAATTTTCAAAGAAATGGCTATAGAACGAGGCTTGGATGATTTAAGGGATTTGCTCGGTCAATCACTTCTTGTCGAGCTTGTTAGCACTGAGCTTGACCCCACGACGAAATTAGAGAAGGAAACTATCAAAGATTATGCCCAGAGGACGAATCAATCAGCAGAAGAGGTTAAATACTTGGCTGAATTTGAAGTGCCAGAGAGCTTTGGAGAGGTTGGGGCGATTTTCGTTGAGAATGAGCATCACAGGGAAATGTTCATCAAGGACGTTGTCCTTGATGGCTTCCTCTTGGGTCCCGTTACATTTACCTGCGAATCCTGGGTTCACTCCAAGTATGATAACCCTGCTAAGAGGGTGTTTTTCCCCAACAAGTCATATTTGCCATCAGAGACACCAGAAGGAGTGAAGAGGTTAAGAGAAGAGGAACTAGAACATTTACGGGGCAATGGGCAAGGTGAACGGAAGAGCTTTGAGAGAATATACGATTATGATGTGTACAACGACCTTGGAGATCCAGATAGCAGTGATGACCTAAAGAGACCCGTTCTTGGTGGCAAGGAACATCCATATCCAAGGCGTTGCAGAACAGGAAGGCCTCGCTGCGACAAAGATCCATTGTCGGAGAAAAGAAGCAACGATGTGTACGTGCCGAGAGACGAATCCTTCTCTGAAGTGAAGCAAGTAACGTTTTCGACAAAGACCTTATCCTCGGGGCTGAAAGCGCTGGTACCCGCGCTGAAGTCATTGGTAGTTGACAAGGATCTAGGGTTTCCTGTCTTCTCATCCATAGATGACCTTTTCGATGAAGGCCTTAGCTTGCCTACTCTCACAGGTCTCAGGAGCATCTTGCCCAGGCTCGTCAGGTTTATTAAGGATACCGAAGAGGACATTCTCCGTTTTGACCCTCCCGCAACAATGGACAAGGATAGATTCTTTTGGTTAAGGGACGAAGAATTTGGAAGACAGACTCTTGCCGGTCTTAACCCTTGTTGCATCCAATTGGTCACGGAATGGCCAATTAAAAGCAAACTTGATCCCGAAATTTATGGCCCTGCGGAATCAGCCATCACTACCGAAATAATTGAGCGGGAAATAAGAGGATTCCTTACTGTCGAAGAGGCCATAAAACAGAAGAAACTGTTCATCCTGGACTACCACGATTTGCTATTGCCATTAGTAAAGGATGTGAGAGAACTTGAAGGCACAACGCTATATGGATCAAGGGCACTGTTCTTCCTAACCCGCGAAGGCACATTGAGGCCGCTGGCTATTGAGCTAACTCGGCCACCGATGGACGGAAAACCGCAATGGAAGGAAGTGTTCACACCTTGCTGGCACTCAACCGGTGTCTGGCTTTGGAGGCTCGCCAAACTTCATATCCTCGCCCACGACTCTGGTTACCATCAACTTGTCAGTCACTGGTTACGAACTCATTGTGCAACAGAGCCTTACATTCTGGCAGCAAACAGGCAACTGAGTGCAATGCACCCAATCTACAGACTCCTGCATCCGCATTTCCGTTACACGATGGAGATCAACGCGCTTGCTCGAGAGGCTCTGATAAACGCCAACGGAATAATCGAAAGCAGTTTCACTCCGGGGAAGCACTCCATCCTCTTAAGTTCAATCGCCTACGACCAACACTGGCAATTCGACCTGCAATCCCTTCCCAAGGACCTCATCAACAGGGGCATGGCCGTGGAGGACCCGAGTGCCCCTCACGGCCTAAAGCTAACCATCGAAGATTACCCTTATGCCAACGACGGCCTCATCCTCTGGGACGCCCTCAAGAGCTGGCTCACCGAATACGTGAACCACTACTACGCAGATGATAGTTTAATAGTGTCAGACACAGAACTCCAAGCCTGGTGGGAAGAGATCAGAACAGTCGGACACGCGGACAAGAAAGACGAGCCGTGGTGGCCGGTTTTGAAAACAAAGCAAGACCTCATTGACATTGTGACAACCATTGCGTGGACAACTTCTGGCCACCACGCTGCTGTGAACTTTGGACAATTCTCTTTTGCGGGGTATTTCCCCAACAGGCCTACCATCGCGCGAAACAAAATGCCCGTGGAGGACCCTTCGGACCCCGAATGGGAACTTTTCTTGCAGAAGCCCGAGGTGACTATGTTGAAGTGCTTCCCGTCGCAGATTCAGGCCACCACCGTGATGACGGTGCTGGACATTCTGTCTAACCACTCGCCGGACGAGGAGTATCTCGGGGACACCGTGGAGCCGGCGTGGGAGGAGGAGCCGCTTGTGAGCGCGGCCTTTGAGAAGTTTAGAGGGAAGTTGCTTGAGCTTGAAGGGATTATTGATGAGAGGAATGCGGATAGGAACAGGAGGAACCGAAATGGTGCAGGTATTGTGCCCTATGAGCTTCTCAAACCGTCTTCGGAGCCTGGTGTCACAGCAAAGGGAGTTCCTTATAGCATCTCTATTTGA 2709 0.4906 MLMQQFHVSNYSSPSCLILQKPCLRGITHPSFRVWSRPNQRKQQKRVTYGYGCRGSSGTKIKAVAVSEVETKSVKVKATITVQPTVGSIFKEMAIERGLDDLRDLLGQSLLVELVSTELDPTTKLEKETIKDYAQRTNQSAEEVKYLAEFEVPESFGEVGAIFVENEHHREMFIKDVVLDGFLLGPVTFTCESWVHSKYDNPAKRVFFPNKSYLPSETPEGVKRLREEELEHLRGNGQGERKSFERIYDYDVYNDLGDPDSSDDLKRPVLGGKEHPYPRRCRTGRPRCDKDPLSEKRSNDVYVPRDESFSEVKQVTFSTKTLSSGLKALVPALKSLVVDKDLGFPVFSSIDDLFDEGLSLPTLTGLRSILPRLVRFIKDTEEDILRFDPPATMDKDRFFWLRDEEFGRQTLAGLNPCCIQLVTEWPIKSKLDPEIYGPAESAITTEIIEREIRGFLTVEEAIKQKKLFILDYHDLLLPLVKDVRELEGTTLYGSRALFFLTREGTLRPLAIELTRPPMDGKPQWKEVFTPCWHSTGVWLWRLAKLHILAHDSGYHQLVSHWLRTHCATEPYILAANRQLSAMHPIYRLLHPHFRYTMEINALAREALINANGIIESSFTPGKHSILLSSIAYDQHWQFDLQSLPKDLINRGMAVEDPSAPHGLKLTIEDYPYANDGLILWDALKSWLTEYVNHYYADDSLIVSDTELQAWWEEIRTVGHADKKDEPWWPVLKTKQDLIDIVTTIAWTTSGHHAAVNFGQFSFAGYFPNRPTIARNKMPVEDPSDPEWELFLQKPEVTMLKCFPSQIQATTVMTVLDILSNHSPDEEYLGDTVEPAWEEEPLVSAAFEKFRGKLLELEGIIDERNADRNRRNRNGAGIVPYELLKPSSEPGVTAKGVPYSISI 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01678 902 FunFam Lipoxygenase 417 551 - -
Pumo11g01678 902 Gene3D - 214 312 - -
Pumo11g01678 902 CDD PLAT_LH2 74 210 IPR042057 -
Pumo11g01678 902 PANTHER LIPOXYGENASE 74 902 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pumo11g01678 902 Gene3D - 399 531 - -
Pumo11g01678 902 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 69 213 IPR036392 GO:0005515
Pumo11g01678 902 Gene3D PLAT/LH2 domain 57 213 - -
Pumo11g01678 902 Pfam Lipoxygenase 222 885 IPR013819 GO:0016702|GO:0046872
Pumo11g01678 902 ProSitePatterns Lipoxygenases iron-binding region signature 2. 582 592 IPR020834 GO:0016702|GO:0046872
Pumo11g01678 902 ProSiteProfiles PLAT domain profile. 89 209 IPR001024 GO:0005515
Pumo11g01678 902 SUPERFAMILY Lipoxigenase 214 902 IPR036226 -
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 385 401 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 179 197 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 424 443 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 492 516 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 815 829 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 205 226 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 244 260 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 276 295 IPR001246 GO:0016491
Pumo11g01678 902 PRINTS Plant lipoxygenase signature 341 362 IPR001246 GO:0016491
Pumo11g01678 902 ProSitePatterns Lipoxygenases iron-binding region signature 1. 555 569 IPR020833 GO:0016702|GO:0046872
Pumo11g01678 902 Pfam PLAT/LH2 domain 138 208 IPR001024 GO:0005515
Pumo11g01678 902 Gene3D - 535 901 - -
Pumo11g01678 902 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 212 902 IPR013819 GO:0016702|GO:0046872
Pumo11g01678 902 MobiDBLite consensus disorder prediction 259 297 - -
Pumo11g01678 902 Gene3D - 313 397 IPR027433 -
Pumo11g01678 902 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Pumo11g01678 902 PRINTS Lipoxygenase signature 575 595 IPR013819 GO:0016702|GO:0046872
Pumo11g01678 902 PRINTS Lipoxygenase signature 537 554 IPR013819 GO:0016702|GO:0046872
Pumo11g01678 902 FunFam Lipoxygenase 214 312 - -
Pumo11g01678 902 FunFam Lipoxygenase 534 901 - -
Pumo11g01678 902 SMART LH2_4 74 210 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01678 Pumo-Chr11 48171047 48182076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01678 152 902 Acyl Lipid Metabolism Gene Families AT3G45140 60.795 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01678 K00454 - gmx:100787202 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01678 11 48171047 48182076 Pumo11g01678 11 48171047 48182076 ECH